G287391


Basic Information

Item Value
gene id G287391
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000073
NCBI id null
chromosome length 1307889
location 190944 ~ 199772 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU325807
CCCAGAGTGGCTCACTAGCACTGTATGATGTGACAGATAACTAGTCATCAGTCCCGTTCAATTCACAGAGCATGTGTTTTCGAAGAATGTACAGGTGTGAGTTCAGTTTTAGACTGTGTGTGACCTTAACGCTGCTGTGTGAACGTGACCATAGTCTTTGGTCTCTCTCACCAAACTTTTCATCTTCTTTGGGGTCATGTAGCCTGATTTGCTCCAAGCATCTCTCCTCCTCACGCTTGATGACACAGTTGGAGATCTCTGAATGTATGGGCCACATCAGGCTAATGATGAGGAAGAGGACGAGGAAGGACGCTCTTGCCGTGTGTCTATGCATTCTGCTCACGATTGTTCCCAGAGATCTCACGTACAGCATTATAAAGCCATCACAGAATGGCACGCGATATAATCCTCCTTCTTCTTTATAACCTCTGCAAATGGACGGTTCGCTTCGTGCACCTGCGATTTCAACTTTGTCATCCGCGTCTTACATCGACAGACTGGAGTAATGAAGGTCTGTAGTGCACTAGAGGAGCGTGAGAGTGAAGAGAGCTCGTGTGCTTGGTGATTCCCTCACAGTCTCTGCTGCTGCTGACAATCACCTGCACTGAGAAACACCAGCATCACTGAACATCACAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU325807 True 636 TUCP 0.48 3 190944 199772

Neighbor

gene id symbol gene type direction distance location
CI01000073_00116439_00125912 ACVR2B coding upstream 64842 116439 ~ 126102 (+)
CI01000073_00104834_00107807 CRYGN, CRYGN2, CRYGN1 coding upstream 83067 104834 ~ 107877 (+)
CI01000073_00048073_00049706 NA coding upstream 140432 47933 ~ 50512 (+)
CI01000073_00249780_00250877 NA coding downstream 50008 249780 ~ 251150 (+)
CI01000073_00262918_00263376 NA coding downstream 63146 262918 ~ 263617 (+)
CI01000073_00275690_00276754 NA coding downstream 75918 275690 ~ 277825 (+)
CI01000073_00334163_00334633 NA coding downstream 134060 333832 ~ 335187 (+)
CI01000073_00384381_00387601 VIML coding downstream 184510 384282 ~ 387601 (+)
G287389 NA non-coding upstream 624 183460 ~ 190320 (+)
G287365 NA non-coding upstream 80529 110105 ~ 110415 (+)
G287364 NA non-coding upstream 81015 109389 ~ 109929 (+)
G287360 NA non-coding upstream 91082 98843 ~ 99862 (+)
G287359 NA non-coding upstream 96232 94371 ~ 94712 (+)
G287397 NA non-coding downstream 814 200586 ~ 207587 (+)
G287419 NA non-coding downstream 26849 226621 ~ 228187 (+)
G287443 NA non-coding downstream 66171 265943 ~ 266152 (+)
G287444 NA non-coding downstream 66594 266366 ~ 266610 (+)
G287445 NA non-coding downstream 67774 267546 ~ 267846 (+)
G287638 NA other downstream 509272 709044 ~ 718401 (+)

Expression


Co-expression Network