RNA id: TCONS_00033954


Basic Information

Item Value
RNA id TCONS_00033954
length 1124
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_016864
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49446787 ~ 49454453 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttctttttaaagaataaaatccATCtttagtctttatttatttattcatactcCGTGTCTTATAATTCAGGTTGAAAGAACCTGTAATAGTACATTAGCAGAAAGAGGAAAGGTCTTTGACACTTTGTGGTTGAcattcacaaaaaatatatatatatatatttaaatatagctaCAGGACACAGTGATCAAGAATACGGGTCTCCTATTCGGTGCAAAGTGTGTGCGTTATGtatgtgaacgtgtgtgtgtgtgtaatcggCAGAGGATACTGGTGACCAGCAATCTCCCTGAGAATAAAtcgtctttttgtgtgtgtgtgaaacacacacgcaaacatcTCTTCTATGAAAAGACAAAAGAATAAACATGGATTCGTAGATACAAACGGGTGACTGGATGAGACGAACACAATCTGAGGAAGGCATGCGTCAAAGGCCTAGAGGTGGGGATTGTCAAAACAACACATCGAAAAAAGCACATCACACAGACAGAAGTCCCATATTTCTCATTCTTCTGAACCGAGGGCAGGCCACGTGTCTTGACGAGAGCGGTTTATAATGACAAAAGGCAAATTTCCTCTTGTTCGTTAAAAAACTGAGACACGTTTCACCTTTCGAACAGAATACAAGCTCATTCACTCATTGGGAATTGTGAAAAACAGTGTGTTGGATGTTTAGTTGTACTATAAACAACACCGTGAACCTGGAAAAATCTGATGCACAGAAAACAGCATGGAAGGAAGCGGTCCGGACCACAGAAATAGACAAGAGAGGTGATCaacaatatacaaaataatacaacAGAAAACTACAGCCGTGCTCCAGCAAGAGTGGCGTTAATCTCTTATGTTTTGCTCTCCTTTTTTTGTCATCCTCCAGTTTGTGAAGTCCACCAGACTGAACAAGAGTCTTTTTTCTCATCATGCCCAGCTGAAATAACCGTCCGTGTCCTGTGAAAGTTGGATCCGGAGTAGCTCCACAACGAAATGGGCAAAAATAAGTCCGATGCCATTTCGTTTCTTTCCATTTGGATGTCCTGGAGGAACTCAAAAGCCGGCTGATCTGGGAAGTTGATCTCGCTGCCGAACACTTCCCTGTACAGAGGAGGGAAACTGTAGGCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033953 lncRNA downstream 98583 49341587 ~ 49348204 (-) True XLOC_016862
TCONS_00033952 lncRNA downstream 702793 48739542 ~ 48743994 (-) True XLOC_016856
TCONS_00033413 lncRNA downstream 714259 48731479 ~ 48732528 (-) True XLOC_016855
TCONS_00033412 lncRNA downstream 714643 48731479 ~ 48732144 (-) False XLOC_016855
TCONS_00033411 lncRNA downstream 732151 48711148 ~ 48714636 (-) True XLOC_016854
TCONS_00033955 lncRNA upstream 66796 49521249 ~ 49522277 (-) True XLOC_016865
TCONS_00032999 lncRNA upstream 101337 49555790 ~ 49556564 (-) True XLOC_016866
TCONS_00033004 lncRNA upstream 337754 49792207 ~ 49793005 (-) False XLOC_016870
TCONS_00033005 lncRNA upstream 337754 49792207 ~ 49793317 (-) False XLOC_016870
TCONS_00033956 lncRNA upstream 337754 49792207 ~ 49793420 (-) True XLOC_016870
TCONS_00032997 mRNA downstream 76745 49366684 ~ 49370042 (-) True XLOC_016863
TCONS_00032996 mRNA downstream 415484 49007592 ~ 49031303 (-) True XLOC_016861
TCONS_00032995 mRNA downstream 480356 48950787 ~ 48966431 (-) True XLOC_016860
TCONS_00032994 mRNA downstream 620080 48817958 ~ 48826707 (-) True XLOC_016859
TCONS_00032993 mRNA downstream 692914 48748254 ~ 48753873 (-) True XLOC_016858
TCONS_00032998 mRNA upstream 101315 49555768 ~ 49557932 (-) False XLOC_016866
TCONS_00033000 mRNA upstream 154343 49608796 ~ 49627099 (-) False XLOC_016867
TCONS_00033001 mRNA upstream 158415 49612868 ~ 49627103 (-) True XLOC_016867
TCONS_00033006 mRNA upstream 390177 49844630 ~ 49860723 (-) False XLOC_016871
TCONS_00033007 mRNA upstream 390281 49844734 ~ 49854432 (-) False XLOC_016871
TCONS_00032992 other downstream 699975 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00032991 other downstream 881841 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 1040582 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032976 other downstream 1289550 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032964 other downstream 1593703 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00033002 other upstream 212303 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 313125 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033024 other upstream 1018973 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 1254913 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033049 other upstream 1961050 51415503 ~ 51415811 (-) True XLOC_016902

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU326201 True 3099 lncRNA 0.37 2 CI01000073 882760 ~ 885894 (+)
striped catfish (Pangasianodon hypophthalmus) TU326201 True 401 lncRNA 0.51 4 NC_047612.1 1101824 ~ 1103022 (+)
tiger barb (Puntius tetrazona) TU22350 True 262 lncRNA 0.30 2 NC_056700.1 24523424 ~ 24602792 (+)