RNA id: TCONS_00033005


Basic Information

Item Value
RNA id TCONS_00033005
length 524
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_016870
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49792207 ~ 49793420 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACGCACAACAGCATAGCGTGCTTTTGGTTGTCATTCATTGAGGCTACAAACAAGTGGGTATCAAGCAGaATCCCACCCGTGTTAATGGTGATTGGCCTGGTGACACAGTCGGCAGATTTGAACTGATATGCTACTTGTGTGAATTACATTCAAAAGGGCAGCCGCTCGCCTCCTCCGTGGGTGTGACTGGCACTGGTGAGGTGGTGGGACCCTTTAATGGTTTGTGGtgatttgtgtatatttttggaGTGCTGTGGTTGCTGTAGTGTGATTGCTGTGCTACTGGGAGTTAAAAGTTTCTCATCTGTTGCATCTTCTCACACTTCGTCCTGCCCCGTTGTAGGCCTGAGGTTTGCCctgaatgttttgttattttgtgttgCTTACTTTAgcattctcttttttaaattgaaattgcCCCATTTATGCAATGTTTTAACGAGTAACTGGTTTTGTACTTTATAATAAAAACTGTTTGAATGAGTCATAGAGTTCTGATTAAGTTTTGTGGCTATTATTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032999 lncRNA downstream 235643 49555790 ~ 49556564 (-) True XLOC_016866
TCONS_00033955 lncRNA downstream 269930 49521249 ~ 49522277 (-) True XLOC_016865
TCONS_00033954 lncRNA downstream 337754 49446787 ~ 49454453 (-) True XLOC_016864
TCONS_00033953 lncRNA downstream 444003 49341587 ~ 49348204 (-) True XLOC_016862
TCONS_00033952 lncRNA downstream 1048213 48739542 ~ 48743994 (-) True XLOC_016856
TCONS_00033008 lncRNA upstream 51567 49844884 ~ 49851884 (-) True XLOC_016871
TCONS_00033013 lncRNA upstream 311494 50104811 ~ 50106618 (-) False XLOC_016875
TCONS_00033015 lncRNA upstream 314989 50108306 ~ 50113861 (-) True XLOC_016875
TCONS_00033021 lncRNA upstream 460938 50254255 ~ 50272025 (-) True XLOC_016878
TCONS_00033957 lncRNA upstream 981092 50774409 ~ 50790581 (-) False XLOC_016884
TCONS_00033001 mRNA downstream 165104 49612868 ~ 49627103 (-) True XLOC_016867
TCONS_00033000 mRNA downstream 165108 49608796 ~ 49627099 (-) False XLOC_016867
TCONS_00032998 mRNA downstream 234275 49555768 ~ 49557932 (-) False XLOC_016866
TCONS_00032997 mRNA downstream 422165 49366684 ~ 49370042 (-) True XLOC_016863
TCONS_00032996 mRNA downstream 760904 49007592 ~ 49031303 (-) True XLOC_016861
TCONS_00033006 mRNA upstream 51313 49844630 ~ 49860723 (-) False XLOC_016871
TCONS_00033007 mRNA upstream 51417 49844734 ~ 49854432 (-) False XLOC_016871
TCONS_00033009 mRNA upstream 91379 49884696 ~ 49978227 (-) True XLOC_016872
TCONS_00033010 mRNA upstream 190842 49984159 ~ 49985351 (-) True XLOC_016873
TCONS_00033011 mRNA upstream 193771 49987088 ~ 50053006 (-) False XLOC_016874
TCONS_00033003 other downstream 22655 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033002 other downstream 125158 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00032992 other downstream 1045395 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00032991 other downstream 1227261 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 1386002 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00033024 other upstream 680109 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 916049 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033049 other upstream 1622186 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033050 other upstream 1635856 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033052 other upstream 1664796 51458113 ~ 51458228 (-) True XLOC_016905

Expression Profile

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