RNA id: TCONS_00033957


Basic Information

Item Value
RNA id TCONS_00033957
length 868
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id XLOC_016884
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 50774409 ~ 50790598 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAACCAGTAACGATGACTGGCAAAAAGCAGCGCTGAGGAGTCGATCGGTGTGAGAAGTCTCAAAACTGACAAACTGTGAAGAGAGTCAGATGCTTCATCCAAAACATGCTCTCCGTCCCCGGCGTCCCGTCAGATTCCCAGAGCCATTCCTGCAATGCCTTTATATTCTTCAGAGACAGGTGCTGAGGCAACTACTACACTGAATAAAGGATTCAttagatttactcaattttttgaAGctgactgcttacctccatgtggatggctttcccactgttaccagtttgaccagtagctcaccatgtacatcgAAGGACTTGAGACGCATAGAGGAGTTGACCACTATGACGGTgctcgagtctggtgaagaacggttccagaaagcagCACAGATGAAAATGAAAGCCTTTGAGAAAGCCAGAGCACATCCACCTCCACATTCCTCCAAGACGAGTTGGGATGTGATGTGATTCTCAATGGCTTCATTAACCTTGAGAAGAGCTCTGGACTCTGCTGTGATCAGATGAACTGGACGCTCAGCCTCTGCATCCAAACCCCATCTGAAGCAGAGAATAATCAATACACGCATGGAGAAAGAGGCGATCACAGCAAGACgcacgcatgcatgcatgcacgcacacacgcacacacacacacactactgcagCTGATGCCAAGTCTATGAGAGAGAGAGGGTTATTCTCCTATGGTGAAGGAGTGCTGCTGGACTGaggttaatatttatatataaatgacattatttaaagagatggttgtgcttctCTTTTCTCACATTGTTGAGAATGGTATTGTTGTTAACTGGAGTTActacatttattaattcactgaaagaaaaaaacaaataaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033021 lncRNA downstream 502384 50254255 ~ 50272025 (-) True XLOC_016878
TCONS_00033015 lncRNA downstream 660548 50108306 ~ 50113861 (-) True XLOC_016875
TCONS_00033013 lncRNA downstream 667791 50104811 ~ 50106618 (-) False XLOC_016875
TCONS_00033008 lncRNA downstream 922525 49844884 ~ 49851884 (-) True XLOC_016871
TCONS_00033956 lncRNA downstream 980989 49792207 ~ 49793420 (-) True XLOC_016870
TCONS_00033959 lncRNA upstream 385416 51175997 ~ 51189707 (-) False XLOC_016890
TCONS_00033960 lncRNA upstream 385416 51175997 ~ 51207447 (-) True XLOC_016890
TCONS_00033961 lncRNA upstream 508747 51299328 ~ 51300918 (-) False XLOC_016895
TCONS_00033414 lncRNA upstream 540471 51331052 ~ 51368890 (-) True XLOC_016897
TCONS_00033415 lncRNA upstream 578647 51369228 ~ 51372091 (-) True XLOC_016898
TCONS_00033027 mRNA downstream 55239 50718112 ~ 50719170 (-) True XLOC_016883
TCONS_00033025 mRNA downstream 66915 50706439 ~ 50707494 (-) True XLOC_016881
TCONS_00033023 mRNA downstream 401942 50278516 ~ 50372467 (-) True XLOC_016879
TCONS_00033022 mRNA downstream 476072 50276755 ~ 50298337 (-) False XLOC_016879
TCONS_00033020 mRNA downstream 502332 50229183 ~ 50272077 (-) False XLOC_016878
TCONS_00033028 mRNA upstream 115516 50906097 ~ 50966124 (-) True XLOC_016885
TCONS_00033029 mRNA upstream 246594 51037175 ~ 51059691 (-) True XLOC_016886
TCONS_00033030 mRNA upstream 275196 51065777 ~ 51087077 (-) True XLOC_016887
TCONS_00033031 mRNA upstream 297867 51088448 ~ 51095743 (-) False XLOC_016888
TCONS_00033032 mRNA upstream 299948 51090529 ~ 51096647 (-) True XLOC_016888
TCONS_00033026 other downstream 64927 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033024 other downstream 300867 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033003 other downstream 1004857 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033002 other downstream 1107360 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00032992 other downstream 2027597 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00033049 other upstream 624922 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033050 other upstream 638592 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033052 other upstream 667532 51458113 ~ 51458228 (-) True XLOC_016905
TCONS_00033068 other upstream 946516 51737097 ~ 51741713 (-) False XLOC_016919
TCONS_00033071 other upstream 948105 51738686 ~ 51748935 (-) False XLOC_016919