RNA id: TCONS_00033021


Basic Information

Item Value
RNA id TCONS_00033021
length 991
lncRNA type retained_intron
GC content 0.45
exon number 3
gene id XLOC_016878
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 50229183 ~ 50272077 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAGGGACTGTGTTTCCGTGAGCACGCGCTGACGGAGTTTTTCTGTTCGTTGTTTCGGCGTcgctctttttattttataagtgaaaaacAAAGCTCGCCACACACGCACTCGGAGTCACAAAAGGGAATCTTACTGACCAGGAGCCCTAGCGGTGCTGGAGATTCATGTTTGCTTTCGTCGTTCTTTCTGGATGATGGTTTCTTTCCTGTGTGTTGCTGTACCCTGAGGGTCCGACCCTCCTcgtcctctccctctctctccgcTGGACCCTATGGAGGAGTAGCTCTTGAGTGACAGGCACAAGAACCAATCGAACGGCAGGAGGAGAGTCAGACTGCAGAGAGGATGTCGTCTAACCGGACCCAGACCCCTCACGGTCTGAAGCAGATCGGGCTGGACCAGATCTGGGATGATCTGCGTGCGGGGATACAGCAGGTGTACACCCGCCAAAGCATGGCCAAGTCACGCTATATGGAGCTCTACACtcatGTGTATAATTATTGCACTAGTGTGCATCAGTCGAATCAGGTCCGCGGTGGAGGCCCCGCCCCGTCCAAACCTTCAAAGAAAACCCCTACACCGGGAGGAGCTCAGTTTGTGGGGCTGGAACTCTACAAGAGACTGAAGGAATTTCTCAAGAATTACCTTACAAATCTGCTAAAGGTAGATTAAAAGAATAGGCTCTGTTTGAAAGACTGGAGTCCGTATGGCTTTTTAATTCAAGTACAGTTTATcaaacaagttaataaaaaaaatagtaagtattaaaatgtttttgaagatTTTTATGTGATTAGCAaaatttttatcatcattactccagtctttaatAACACGCGATCCGTCAAAGATAATTAtgatatgctgatttgatgcttaaaggggtggtccactacgatatcatatgcTAAACTTTAGTTGATGCATAATATAAcggtgtgaacataaacaacatctctgaatgtaatatgctcaaagctCAACGCAAA

Function

GO:

id name namespace
GO:0038061 NIK/NF-kappaB signaling biological_process
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2603 Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within NIK/NF-kappaB signaling. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human CUL1 (cullin 1).

Ensembl:

ensembl_id ENSDART00000143477

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033015 lncRNA downstream 140394 50108306 ~ 50113861 (-) True XLOC_016875
TCONS_00033013 lncRNA downstream 147637 50104811 ~ 50106618 (-) False XLOC_016875
TCONS_00033008 lncRNA downstream 402371 49844884 ~ 49851884 (-) True XLOC_016871
TCONS_00033956 lncRNA downstream 460835 49792207 ~ 49793420 (-) True XLOC_016870
TCONS_00033005 lncRNA downstream 460938 49792207 ~ 49793317 (-) False XLOC_016870
TCONS_00033957 lncRNA upstream 502384 50774409 ~ 50790581 (-) False XLOC_016884
TCONS_00033958 lncRNA upstream 518068 50790093 ~ 50790598 (-) True XLOC_016884
TCONS_00033959 lncRNA upstream 903972 51175997 ~ 51189707 (-) False XLOC_016890
TCONS_00033960 lncRNA upstream 903972 51175997 ~ 51207447 (-) True XLOC_016890
TCONS_00033961 lncRNA upstream 1027303 51299328 ~ 51300918 (-) False XLOC_016895
TCONS_00033018 mRNA downstream 28760 50199738 ~ 50225495 (-) False XLOC_016877
TCONS_00033019 mRNA downstream 28844 50217948 ~ 50225411 (-) True XLOC_016877
TCONS_00033017 mRNA downstream 55927 50133594 ~ 50198328 (-) False XLOC_016876
TCONS_00033016 mRNA downstream 55927 50133594 ~ 50198328 (-) True XLOC_016876
TCONS_00033014 mRNA downstream 127918 50104811 ~ 50126337 (-) False XLOC_016875
TCONS_00033022 mRNA upstream 4730 50276755 ~ 50298337 (-) False XLOC_016879
TCONS_00033023 mRNA upstream 6491 50278516 ~ 50372467 (-) True XLOC_016879
TCONS_00033025 mRNA upstream 434414 50706439 ~ 50707494 (-) True XLOC_016881
TCONS_00033027 mRNA upstream 446087 50718112 ~ 50719170 (-) True XLOC_016883
TCONS_00033028 mRNA upstream 634072 50906097 ~ 50966124 (-) True XLOC_016885
TCONS_00033003 other downstream 484703 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033002 other downstream 587206 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00032992 other downstream 1507443 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00032991 other downstream 1689309 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 1848050 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00033024 other upstream 201401 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 437341 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033049 other upstream 1143478 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033050 other upstream 1157148 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033052 other upstream 1186088 51458113 ~ 51458228 (-) True XLOC_016905

Expression Profile

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