XLOC_016883 (xcr1b.1)


Basic Information

Item Value
gene id XLOC_016883
gene name xcr1b.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 50718112 ~ 50719170 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033027
ATGGATCTCCAAACAGTGACTCCAAAACAGAATGAAAACTCGACTTATGATTACAATGACGATTACACTGATGAAGCCTGTAATAAGATGAATGTTATCCAGTTTGGGACGATCGTCTCTCCGATCATTTTCACCATTGTGGTTATGTTCAGCTGTGtaggaaacattttggttttgtGCGTCCTCGTGAAATATGAAAATCTGCGATCCCTCACCAACACGTTCCTGCTAAATCTAGCCATCTCTGATCTGATTTTCACTGTCGGGTTGCCGTTCTGGGCCTACTACTATGTCAACGGCTGGACTCTTGGAGATCACGCTTGCAAAGCGGTTAATTACGTTTTTTATACGGGATATTACAGCAGCATCATATTCATGACGGTTTTAACCATACACCGATACGTGGCTGTGGTCCACCCTCTGTCAGTGGTGATGTCCAGAAAGAGCATCCACTGCTACGCCACGTCAATTGTGGTCTGGATCATCAGTTTATCCGCTGCCATCCCACAAGCCATGTTCAAAACGGTTGTGAGAAACCCTATTGACACTCAAAGCGAAGCCTCTGATGTAATCAAGCTCTGTGATTTCGATGGTCAAATCAACTGGAAGCTCTGGAGCACGTACTTACAGAATGGCTTCTTCATTGTGGCTTTCCTGATCATCGCCTTCTGCTACACCGTGATTCTGACCCGGCTGCTTCGGCCGACGTCTCACACTCGCAAGAAGACCGTGCACCTCATCTTCTTCATCgtgctgttttttttcttggGATGGGGGCCGTTTAACGTGGCCATATTTCTGGACTCGCTGATTTCGTGGGGGATCTCTCCTTTTAACGAATGTGAGGTCAGTAAGTCAATCGACTACTTGATGTACGTCTCTCAGATGGTGGCGTACTCACACTGCTGTCTGAATCCAGTGGTTTACGTTTTTATGGGGATAAAGTTCAGAAACCACTTGAAGAAAATGCTGTGGACTTTGTGTAAGAACAACGTGGAGCCTCCGAATCGAAACAGCAGGATTATTTACTCCAACGGCGAAGAAATATCCATgtattag

Function

symbol description
xcr1b.1 Predicted to enable chemokine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human XCR1 (X-C motif chemokine receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070302-7 Predicted to enable chemokine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human XCR1 (X-C motif chemokine receptor 1).

Ensembl:

ensembl_id ENSDARG00000052988

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033027 True 1059 mRNA 0.46 1 50718112 50719170

Neighbor

gene id symbol gene type direction distance location
XLOC_016882 CABZ01053221.2 coding downstream 8630 50709366 ~ 50709482 (-)
XLOC_016881 CABZ01053221.1 coding downstream 10618 50706439 ~ 50707494 (-)
XLOC_016880 CABZ01067968.1 coding downstream 244570 50473426 ~ 50473542 (-)
XLOC_016879 cntnap2b coding downstream 345645 50276755 ~ 50372467 (-)
XLOC_016878 cul1a coding downstream 446035 50229183 ~ 50272077 (-)
XLOC_016884 NA coding upstream 55239 50774409 ~ 50790598 (-)
XLOC_016885 ghrhra coding upstream 186927 50906097 ~ 50966124 (-)
XLOC_016886 ftr87 coding upstream 318005 51037175 ~ 51059691 (-)
XLOC_016887 ftr67 coding upstream 346607 51065777 ~ 51087077 (-)
XLOC_016888 THEM6 coding upstream 369278 51088448 ~ 51096647 (-)
XLOC_016870 NA non-coding downstream 924692 49792207 ~ 49793420 (-)
XLOC_016869 BX284666.2 non-coding downstream 948560 49767578 ~ 49769552 (-)
XLOC_016868 BX323861.2 non-coding downstream 1051063 49666756 ~ 49667049 (-)
XLOC_016890 NA non-coding upstream 456827 51175997 ~ 51207447 (-)
XLOC_016895 NA non-coding upstream 580158 51299328 ~ 51303937 (-)
XLOC_016897 NA non-coding upstream 611882 51331052 ~ 51368890 (-)
XLOC_016898 NA non-coding upstream 650058 51369228 ~ 51372091 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000073_00249780_00250877 NA coding CI01000073 null 249780 ~ 251150 (+)