XLOC_016886 (ftr87)


Basic Information

Item Value
gene id XLOC_016886
gene name ftr87
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51037175 ~ 51059691 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033029
ACGCCCAGTTTATACACAAACACTCTTTGTTTCGTCCTCTCTCTGTCCTGTCCAGCTTTCTGTAGTCATTTCCCTCTGctttaaccacacacacacacattaaaaatggCAGGGACAAACATCTCTATCGATAAAGAGCAATTCTGCTGCTCGGTGTGTTTGGAGGTGCTCTGGGAGCCGGTCACTATTCCCTGCGGACACAGTTACTGTATGGAGTGTATTAAAGGTTACTGGAGGAAATGCGAGGTGAAAGAGGAGTACAGTTGCCCTCAATGCAGACGCACGTTCAGCCCGAGACCTGCCCTGTCCAGAAACACCATGCTGGCTGACATTGTGGAGAAACTGAGAAAAAGCGGTGTTCAGGATGTCAGTGCGAAGGCCTCGGATGTGGAGTGTGACGTGTGCACCGGGAAGAAACACCGAGCGGTGAAGTTTTGTGTGAAATGTCAGACGCTGTACTGCGAGATTCACCTGAAGCCTCATAATGAAAGAAATCGAGGGAGAGCGCATCAGCTTATAGAAGTCACGAAACAGCCGCAGAAAAGAGTCTGCGCGCGTCATAATAAATTGCGGGAGGTTTACTGTCGGACGGACCAACAATGCATTTGTggtttgtgtttaaaagatggaCACAAGGGGCACAGCGTGGTGTCGGTGATTGAAGAGAGGACAGAAAAACagAAACATCTAGAGGAGGCCTGGAGGAAGTCCAAACAGAGGTGTAGAGAACGAGAAAAGGAGCTGAGGGACATTGTAAAATATATCAAGCGTTCAGCTCAAGCGGTTGAGGAGGACAGTGAGAAGATCTTCACCAGACTTCAGCGCACCACTGAAAGAAAGCATTCAGAGGTCAAAGAGCTGATCAGAGGAGAGGAGAGGACTGCACTCGGACAGACTGAGAAACTTCTGGAGCGACTCAATCAACAGATAGTTGAGCAGCGAAGAGGAGAAGCTGAACTAGAGGCGCTCGCAAACACTGAGGATCATATCCATTTCCTACAGAACTATAAGATGCTCTGCGCGCCTCCTGACGCCGGCGGTCGACCCAGCATTGATGTCCATCCGTATTTCTCCTTGCTGATTTTGAGAAAGGCCCTCACAGAGCTGACGGATAAAGTGGCTgagatctgcgacagagaagcAGCCAAGATCTCAGAAATCGTTGATGAAGAGCGCGATCAGTCAGCTGAAAACTCCCTGAGCGCTGAAACAGCCCGCAGAGACTCCCAACAGACTGAGCCGAAGAGCAGAGGAGACTTCTTACAACaCTGCTGTGATTTGACATTCGACCCAAACACCGCGGACTCTCTCCTCAGACTTTCTGAAGACCAGACTGAAGTGATGAGCGCCGCCGAGCCTCAACTGAACGCAGATCAGCAGGAAATCTTCAGCGGAGGATCTCATGTCCTGTGCAGTGAGTCTCTGTCAGGACGCCGGTACTGGGAGGTGGAGTGGAGCGGTGCTGTTTCCATTGCTCTCTCCTACAAATCCATTCACACCACTAGAGCCAATCCAGATCAGAAACAGGGATGCAACTCCACATCCTGGAGTCTGGATGTTTCAGATTCTCGCTGTGTGTTCAGACACAGCAAATTAAGTGTAGAAATACACACTCCGGTGGCACACAGAGTCGGTGTGTTTCTCGATCACAGAGCAGGATCTCTGGTGTTTTATAGTGTTTCTCTGGTTGATGGCACGATGGTTTTACTGCATCGAGAGCAGACCGTCTTCACTCAGCCTCTTTATCCTGGGTTCTGGGTTGGACTGGGATCCGCTTTAAAACTCTGTCAAACTTTTAGCTTTTCTGCTTAGTGATGTACTGAGCTCTAACTAACATCCTTTGAAAtgagcattattttattatttttattcaatgtttgaccaAAGTCCTTTTAGGGCAGGTTATTTCACtctgcagccatctttgaaacacc

Function

symbol description
ftr87 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-62 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDARG00000102557

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033029 True 1934 mRNA 0.49 7 51037175 51059691

Neighbor

gene id symbol gene type direction distance location
XLOC_016885 ghrhra coding downstream 71051 50906097 ~ 50966124 (-)
XLOC_016884 NA coding downstream 246577 50774409 ~ 50790598 (-)
XLOC_016883 xcr1b.1 coding downstream 318005 50718112 ~ 50719170 (-)
XLOC_016882 CABZ01053221.2 coding downstream 327693 50709366 ~ 50709482 (-)
XLOC_016881 CABZ01053221.1 coding downstream 329681 50706439 ~ 50707494 (-)
XLOC_016887 ftr67 coding upstream 6086 51065777 ~ 51087077 (-)
XLOC_016888 THEM6 coding upstream 28757 51088448 ~ 51096647 (-)
XLOC_016889 them6 coding upstream 38858 51098549 ~ 51109476 (-)
XLOC_016890 NA coding upstream 116306 51175997 ~ 51207447 (-)
XLOC_016891 pigrl4.2 coding upstream 160592 51220283 ~ 51223658 (-)
XLOC_016880 CABZ01067968.1 non-coding downstream 563633 50473426 ~ 50473542 (-)
XLOC_016870 NA non-coding downstream 1243755 49792207 ~ 49793420 (-)
XLOC_016869 BX284666.2 non-coding downstream 1267623 49767578 ~ 49769552 (-)
XLOC_016895 NA non-coding upstream 239637 51299328 ~ 51303937 (-)
XLOC_016897 NA non-coding upstream 271361 51331052 ~ 51368890 (-)
XLOC_016898 NA non-coding upstream 309537 51369228 ~ 51372091 (-)
XLOC_016900 NA non-coding upstream 338896 51398587 ~ 51407308 (-)

Expression


Co-expression Network