XLOC_016890


Basic Information

Item Value
gene id XLOC_016890
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51175997 ~ 51207447 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033959
CTTGAGTTTCTGTCCTAATCAGCGAGAGCAGCAGGAGACTGcggacacaacacacacacacacgcataagcACACACAAAACTTCCTTACAGCTTGTTCTGAATCAGAAAAAATATGTTTCTTTCTCGTGCAGTTCCTCTTTTCTGTGTTCCAGGTGAGTTGAGAGTGACTCCAAATGGATCGATACAGAGTTCTGGGTCGAACATCTTTGAGGCGAAAGCACAGACGAATCCATCAGGAACAGCATTAATGTGCTTTCACAAGAGAAGAAAGACTGGAGTGTGGCTCATCTTCACTTGTTTAACTATTAACCACGCAacatattacaataattaattttCTAATTGATTTCTATCAAGCTATTGTCTCTGATCAAACACGGGCCGTGCTGAAGCTAATTTCTTGTGAAGCACGAGGTTACACGGGTCAATTAGGCAATTTATGCGAGACGGCTCATGAATATTCACACACCGCAGGAATATTAGTGATGTGACTGGGCCAGATACATCGATATGCAAATGAGGCCCAGGAGGTGAAGTTGGTTATGATTTAGCGAATGATTTTCAGCGCTGTGTGGAGTTATGATCTATAGCTTTAATCTCAGGTTTGTTGAATTGTAGGTCAAGACACGAACAGAAGAAGGCAGGATCTTATCGTTTAGGTAGACCGGATGACCAGGATAAAAAATGGGGACAGTTTGAAGACACAACTGGTTGCGTTGGTGTCTATGGAGGGTCAGAAAGCtctaggatttcatctaaaatactgtatcttcatttgtgttctgaagatgatcaAAGGTCACAGAGGACTGGAACAATATGAGGG
>TCONS_00033960
ttttttacaacacaaccttCTTGATACATAACATAACGCCTTTCCGCCATGAAAATTGAaatgcttaattctgattggtcagtttacATGTCCCAAAATCAGTTTTAACCCAATAAACAATGAGGGCTGTAGCTGCTGTTCACATCGCCAATAACAAAACTGTCATGGCGTCGGTGCTCTTTTCAGTTGCATCACAGCGCACCTTTTGGCATTTTATTCAAGTAGCGCTTCAGTTATCGACAGTATTTACTGTAAACCAAAACGTTTACACTTTACTGTCAATACCAGACCTAAAGTGAAACTGTTAcaattgttcacagctgttctaTGTTATCTTGATGTTTTACCGTCACCAGTACTGCACAGaaagttTCTCACCAGTGACTCTCAGCACCTGCAGGCTGACCAGAGGCTTCAGTGAAGCGGGACTCAGAGTTCTCAGGTTATTTCGGCTGAGGTCCAGAAGAGCCAGCGAGGACAGTCCCACCAGAGCCTGATCTCCCAGCACCTCCAGCACATTCTCCTGCAGATGAAGCTCCTGCAGCCGCTGCAAACAGTGCATTAACATTTCAATACGGTTATTACGGTCAAGACACGAACAGAAGAAGGCAGGATCTTATCGTTTAGGTAGACCGGATGACCAGGATAAAAAATGGGGACAGTTTGAAGACACAACTGGTTGCGTTGGTGTCTATGGAGGGTCAGAAAGCtctaggatttcatctaaaatactgtatcttcatttgtgttctgaagatgatcaAAGGTCACAGAGGACTGGAACAATATGAGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033959 False 828 lncRNA 0.42 2 51175997 51189707
TCONS_00033960 True 794 lncRNA 0.44 4 51175997 51207447

Neighbor

gene id symbol gene type direction distance location
XLOC_016889 them6 coding downstream 66521 51098549 ~ 51109476 (-)
XLOC_016888 THEM6 coding downstream 79350 51088448 ~ 51096647 (-)
XLOC_016887 ftr67 coding downstream 88920 51065777 ~ 51087077 (-)
XLOC_016886 ftr87 coding downstream 116306 51037175 ~ 51059691 (-)
XLOC_016885 ghrhra coding downstream 209873 50906097 ~ 50966124 (-)
XLOC_016891 pigrl4.2 coding upstream 12836 51220283 ~ 51223658 (-)
XLOC_016892 si:ch211-215e19.6 coding upstream 44142 51251589 ~ 51259378 (-)
XLOC_016893 si:ch211-215e19.4 coding upstream 66348 51273795 ~ 51275873 (-)
XLOC_016894 si:ch211-215e19.3 coding upstream 74332 51281779 ~ 51316195 (-)
XLOC_016895 NA coding upstream 91881 51299328 ~ 51303937 (-)
XLOC_016884 NA non-coding downstream 385399 50774409 ~ 50790598 (-)
XLOC_016882 CABZ01053221.2 non-coding downstream 466515 50709366 ~ 50709482 (-)
XLOC_016880 CABZ01067968.1 non-coding downstream 702455 50473426 ~ 50473542 (-)
XLOC_016870 NA non-coding downstream 1382577 49792207 ~ 49793420 (-)
XLOC_016869 BX284666.2 non-coding downstream 1406445 49767578 ~ 49769552 (-)
XLOC_016897 NA non-coding upstream 123605 51331052 ~ 51368890 (-)
XLOC_016898 NA non-coding upstream 161781 51369228 ~ 51372091 (-)
XLOC_016900 NA non-coding upstream 191140 51398587 ~ 51407308 (-)
XLOC_016901 NA non-coding upstream 201784 51409231 ~ 51409948 (-)

Expression


Co-expression Network