XLOC_016892 (si:ch211-215e19.6)


Basic Information

Item Value
gene id XLOC_016892
gene name si:ch211-215e19.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51251589 ~ 51259378 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033036
tgcggacATGATTCACCCTCTGATTCTCGCTGGGGTTTTACTTCACATTGGagATGGAGTTTGGATTAATAAACTGAATATAGGAGTGAAATCTGGATCTCCAGGCATTATTCCATGTCTATATGAAGAACAATATAAAGAACACCAGAAGTATTGGTGTCGGGGATACATTTGGAGCTCTTGCTCTATATTGGCTTATGTAAATGAAACAAGAAATAAATTCTCCATCACTGATTATCCAGCACAGAGTATCTTTACAGTGGAATGGCAGAATCTGCAGGAGTCCAACTCTTCATATTACTGGTGCGCTGTGGAGATCGGTGGTCCTGGGACACTAGACGCTGGTTATTATTTGTATCTGACGGTACAATCAGATCCTGCTCTGTCTGTGTTGAACAGCAGTGTATCCGGACATGAAGGTGGTAATGTCAGTGTTCAGTGTTTCTACAGTTCTGGATATAAGGCTAAAACCAAACAGTGGTGCAGATTTAAAGATAAGAGCTGTTTCACAGAGAAAAAGACTGACACGTTCCAGAATCCATCAGTGCAGATCAGTGATGATGGTAAAAGCTCCTTCACTGTGCTGATGACTGGACTGAGACTCTCTGATTCTGGATGGTATTTCTGCTCTGTTGGAGATCTGCAGGTTCCTGTTCAACTCACTGTCACTAAACCTGTACCCAAAGGCAGGAACACAACACAACTCTCCACCAACACGacttctgcaaaaatgcattCAACAATAAACAGTAAGAAGCAGCTAAATTGGATTATTTAGAAATTATTCAGAAAAGGTGAACAAATTAAGAAAGAAGAACGTGTTGACAGCAGCACCATGAAAACTATGCCCCCTGAAAACCAAATGACATCTATCAGTCCTGCAGAAGCTGATTCTTCTGCAGATGACGCTTCAGTGCTTTACAGTCCTGTCTCCTTTACAAAGACACGTTTATCATCAGTGGATCCAGAACCTGATGTGCTCTACAGCACTGTGATGAAAGATCGCAAAAATGTATAATGCAGAATTAATTCATGGCCAAATATTGGATGAATGCGGCACATCAGTATATTTGAAGAAGATGAATCCtgctttaataaatttttttttctcatcctTAAATTTAAGTCCAAATTACCATTAAGTCCGAAGACAATTTATCAGgtttttacaacaaaaaagagagaaacaacccaaaaataaccaaaaatctaactaaaatatc
>TCONS_00033037
ATGATTCACCCTCTGATTCTCGCTGGGGTTTTACTTCACATTGGagTTTGGATTAATAAACTGAATATAGGAGTGAAATCTGGATCTCCAGGCATTATTCCATGTCTATATGAAGAACAATATAAAGAACACCAGAAGTATTGGTGTCGGGGATACATTTGGAGCTCTTGCTCTATATTGGCTTATGTAAATGAAACAAGAAATAAATTCTCCATCACTGATTATCCAGCACAGAGTATCTTTACAGTGGAATGGCAGAATCTGCAGGAGTCCAACTCTTCATATTACTGGTGCGCTGTGGAGATCGGTGGTCCTGGGACACTAGACGCTGGTTATTATTTGTATCTGACGGTACAATCAGATCCTGCTCTGTCTGTGTTGAACAGCAGTGTATCCGGACATGAAGGTGGTAATGTCAGTGTTCAGTGTTTCTACAGTTCTGGATATAAGGCTAAAACCAAACAGTGGTGCAGATTTAAAGATAAGAGCTGTTTCACAGAGAAAAAGACTGACACGTTCCAGAATCCATCAGTGCAGATCAGTGATGATGGTAAAAGCTCCTTCACTGTGCTGATGACTGGACTGAGACTCTCTGATTCTGGATGGTATTTCTGCTCTGTTGGAGATCTGCAGGTTCCTGTTCAACTCACTGTCACTAAACCTGTACCCAAAG
>TCONS_00033038
ATGATTCACCCTCTGATTCTCGCTGGGGTTTTACTTCACATTGGagATGGAGTTTGGATTAATAAACTGAATATAGGAGTGAAATCTGGATCTCCAGGCATTATTCCATGTCTATATGAAGAACAATATAAAGAACACCAGAAGTATTGGTGTCGGGGATACATTTGGAGCTCTTGCTCTATATTGGCTTATGTAAATGAAACAAGAAATAAATTCTCCATCACTGATTATCCAGCACAGAGTATCTTTACAGTGGAATGGCAGAATCTGCAGGAGTCCAACTCTTCATATTACTGGTGCGCTGTGGAGATCGGTGGTCCTGGGACACTAGACGCTGGTTATTATTTGTATCTGACGGTACAATCAGATCCTGCTCTGTCTGTGTTGAACAGCAGTGTATCCGGACATGAAGGTGGTAATGTCAGTGTTCAGTGTTTCTACAGTTCTGGATATAAGGCTAAAACCAAACAGTGGTGCAGATTTAAAGATAAGAGCTGTTTCACAGAGAAAA

Function

symbol description
si:ch211-215e19.6 Predicted to enable transmembrane signaling receptor activity. Predicted to be active in plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101360

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033036 False 1223 mRNA 0.39 9 51251589 51259378
TCONS_00033037 False 673 mRNA 0.42 3 51257170 51259371
TCONS_00033038 True 511 mRNA 0.41 3 51257338 51259371

Neighbor

gene id symbol gene type direction distance location
XLOC_016891 pigrl4.2 coding downstream 27931 51220283 ~ 51223658 (-)
XLOC_016890 NA coding downstream 44142 51175997 ~ 51207447 (-)
XLOC_016889 them6 coding downstream 142113 51098549 ~ 51109476 (-)
XLOC_016888 THEM6 coding downstream 154942 51088448 ~ 51096647 (-)
XLOC_016887 ftr67 coding downstream 164512 51065777 ~ 51087077 (-)
XLOC_016893 si:ch211-215e19.4 coding upstream 14417 51273795 ~ 51275873 (-)
XLOC_016894 si:ch211-215e19.3 coding upstream 22401 51281779 ~ 51316195 (-)
XLOC_016895 NA coding upstream 39950 51299328 ~ 51303937 (-)
XLOC_016896 si:dkeyp-104b3.21 coding upstream 62395 51321773 ~ 51330642 (-)
XLOC_016897 NA coding upstream 71674 51331052 ~ 51368890 (-)
XLOC_016884 NA non-coding downstream 460991 50774409 ~ 50790598 (-)
XLOC_016882 CABZ01053221.2 non-coding downstream 542107 50709366 ~ 50709482 (-)
XLOC_016880 CABZ01067968.1 non-coding downstream 778047 50473426 ~ 50473542 (-)
XLOC_016870 NA non-coding downstream 1458169 49792207 ~ 49793420 (-)
XLOC_016898 NA non-coding upstream 109850 51369228 ~ 51372091 (-)
XLOC_016900 NA non-coding upstream 139209 51398587 ~ 51407308 (-)
XLOC_016901 NA non-coding upstream 149853 51409231 ~ 51409948 (-)

Expression


Co-expression Network