XLOC_016894 (si:ch211-215e19.3)


Basic Information

Item Value
gene id XLOC_016894
gene name si:ch211-215e19.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51281779 ~ 51316195 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033040
agACATGATTTACACTCTGATTCTTTCTGGGGTTTTACTTCACATTGGagATGGAGTTTGGATTAATAAACTGAATATAGGAGTGAAATCTGGATCTCCAGGCATTATTCCATGTCTATATGATGAACAATATAAAGAACACCAGAAGTTTTGGTGTTGGGGGACATTTTTTAGCACTTGCTCTATATTGGCTTATGTAAATGAAACAAGAAATAAATTCTCCATCACTGATTATCCAGCACAGAGTATCTTTACAGTGGAATGGCAGAATCTGCAGCTGTCAGACTCTTCATATTACTGGTGCGTTGTGGAGATCGGTGGTCCTGGGACACTAGACGCTGGTTATTATTTGTATCTGACGGTACAATCAGctcctGATTTGTCTGTGATGAACAGCAGTGTATCTGGACATGAAGGTGGTAATGTTAGTGTTCAGTGTTTCTACAGTTCTGGATATAAGAATAAAACCAAACAGTGGTGCAGAGTTAAAGATAAGAGCTGTTTCCCAGAGAATAAGACAGACACATTCCAGAATTCATCAGTGCAGATCAGTGATGATGGTGAAAGCTGCTTCACTGTGCTGATGACTGGACTGACACTCTCTGATTCTGGATGGTATTTCTGCTCTGCTGGAAATCTGCAGGTTCCTGTTCAACTCACTGTCACTAAACCTGAACCCAAAGGTACACAACACAGCCGTCAGCCAAACAAATTCCTACAACAGTTTTGACTACCGTTTCAAGACCCGGGACAAACAtACTGAACAAGGAGCATTTCTGTCTGTCAAAGGCCTAGATGTGATTCTCTATCTCACCCTGAAGAATCAGAGAATTAGAAAAGTGTTGATTAATAATATTCTATATTTGCTTTATGCTTA
>TCONS_00033041
tccaCTGCAGACATGATTCAAACTCTGATTCTCACTGGGGTTTTGCTTCACATTGGAGATGGAGCTTGGATTGATAAACTGAATATAGGAGTGAAATCTGGATCTCCAGGCATTATTCCATGTCTATATAAAGAACAATATAAAGAAAATCACAAGTATTGGTGTCAGGGGATGTTTTGGAGCTCTTGCACTATATTGGCATTTGGAAATGGCCCAAGAAGTAAATTTTCCATCACTTATTACCCAGCGCAAAGTATCTTTACAGTGGAATGGCAGAATCTGCAGCCGTCAGACTCTGGATATTACTGGTGCGCTGTGGAGATCGGTGACAGTGGGATACCAGACGCTCGTTATTATTTGTATCTGAAGGTACAACCAGTTCCTGATGTGTCTGTGAAGAGCAGCAGTGTATCTGGACATGAGGGTGGTAATGTCAGTGTCCAGTGTTTCTACAGCTCAGAATATCACAATAAACTCAAAGGCTGGTGCAGATTTAAAGataagaggtgtttcaaagaagAAAAGACTGACACATCCCAGAATCCATCAGTGCAGATCAGTGATGATGGTGAAAGCTCCTTCACTGTGCTGATGACTGGACTGACACTCTCTGATTCTGGATGGTATTTCTGCTCTGCTGGAAATCTGCAGGTTCCTGTTCGACTCACTGTCACTAAACCTGAACCCAAAGctcctGATTTGTCTGTGATGAACAGCAGTGTATCTGGACATGAAGGTGGTAATGTTAGTGTTCAGTGTTTCTACAGTTCTGGATATAAGAATAAAACCAAACAGTGGTGCAGAGTTAAAGATAAGAGCTGTTTCCCAGAGAATAAGACAGACACATTCCAGAATTCATCAGTGCAGATCAGTGATGATGGTGAAAGCTGCTTCACTGTGCTGATGACTGGACTGACACTCTCTGATTCTGGATGGTATTTCTGCTCTGCTGGAAATCTGCAGGTTCCTGTTCAACTCACTGTCACTAAACCTGAACCCAAAGACAGGTACACAACACAGCCGTCAGCCAAACAAATTCCTACAACAGTTTTGACTACCGTTTCAAGACCCGGGACAAACAtACTGAACAAGGAGCATTTCTGTCTGTCAAAGGCCTAGATGTG
>TCONS_00033043
TGCAGACATGATTCAAACTCTGATTCTCACTGGGGTTTTGCTTCACATTGGAGATGGAGCTTGGATTGATAAACTGAATATAGGAGTGAAATCTGGATCTCCAGGCATTATTCCATGTCTATATAAAGAACAATATAAAGAAAATCACAAGTATTGGTGTCAGGGGATGTTTTGGAGCTCTTGCACTATATTGGCATTTGGAAATGGCCCAAGAAGTAAATTTTCCATCACTTATTACCCAGCGCAAAGTATCTTTACAGTGGAATGGCAGAATCTGCAGCCGTCAGACTCTGGATATTACTGGTGCGCTGTGGAGATCGGTGACAGTGGGATACCAGACGCTCGTTATTATTTGTATCTGAAGGTACAACCAGTTCCTGATGTGTCTGTGAAGAGCAGCAGTGTATCTGGACATGAGGGTGGTAATGTCAGTGTCCAGTGTTTCTACAGCTCAGAATATCACAATAAACTCAAAGGCTGGTGCAGATTTAAAGataagaggtgtttcaaagaagAAAAGACTGACACATCCCAGAATCCATCAGTGCAGATCAGTGATGATGGTGAAAGCTCCTTCACTGTGCTGATGACTGGACTGACACTCTCTGATTCTGGATGGTATTTCTGCTCTGCTGGAAATCTGCAGGTTCCTGTTCGACTCACTGTCACTAAACCTGAACCCAAAGCAGCCATGACTACTGGTTCAAGACCCAAATCACGTGTAAAAGACCCTTATCGCCCTCCAACAACAGATTCAGAGATTAACACGGGAAAAGACAACAAGGATGAACAAAACAAGTATGACATGATTCTGATCATGTGCCTTGTAGTGACACTTGCGCTTTTACTGCTCGTCGCTCTTTTTACCATAATAATCAGAAGGATGAGAAAGAATCCAGAAGGTGATCCAATTAGAGAAGAACGTTTTAACAGCAGCACCATGAATactATGCCCTCTGAAAACCAAATGACATCTATCAGTCCTGCAGAAGCTGATTCTTCTGCTGATGATAGTTCTATGGTTTACAGTCCTGTCTCTTTTACTAAGACACGTTTATCATCAGTGGACCCCATAGCTGATGTGCTCTACAGCGCTGTGATGAAAGATCGCAAAACTGTATAATGCAGAATTATTTAATGGCCAAATAAAGGAAGGAGACATATCAGCATTTTTGAAGAAGATGAATCTTGCTTTAATATTTCTTCTCATCCTTAGTTTTAAGTTCAAATTACTCTAAAGACAATTTACCATGCTTTTactaaaagaagaaaacaaacaacataCATGGTGAACAAAAATCAGCCATGGTTTTGCTATACtatagtatttg
>TCONS_00033044
AGACATGATTCAAACTCTGATTCTCACTGGGGTTTTGCTTCACATTGGAGATGGAGCTTGGATTGATAAACTGAATATAGGAGTGAAATCTGGATCTCCAGGCATTATTCCATGTCTATATAAAGAACAATATAAAGAAAATCACAAGTATTGGTGTCAGGGGATGTTTTGGAGCTCTTGCACTATATTGGCATTTGGAAATGGCCCAAGAAGTAAATTTTCCATCACTTATTACCCAGCGCAAAGTATCTTTACAGTGGAATGGCAGAATCTGCAGCCGTCAGACTCTGGATATTACTGGTGCGCTGTGGAGATCGGTGACAGTGGGATACCAGACGCTCGTTATTATTTGTATCTGAAGGTACAACCAGTTCCTGATGTGTCTGTGAAGAGCAGCAGTGTATCTGGACATGAGGGTGGTAATGTCAGTGTCCAGTGTTTCTACAGCTCAGAATATCACAATAAACTCAAAGGCTGGTGCAGATTTAAAGataagaggtgtttcaaagaagAAAAGACTGACACATCCCAGAATCCATCAGTGCAGATCAGTGATGATGGTGAAAGCTCCTTCACTGTGCTGATGACTGGACTGACACTCTCTGATTCTGGATGGTATTTCTGCTCTGCTGGAAATCTGCAGGTTCCTGTTCGACTCACTGTCACTAAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-685 No description available
ZDB-GENE-150409-6 Predicted to enable transmembrane signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000098216 ENSDARG00000099938

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033040 False 877 mRNA 0.40 6 51281779 51290607
TCONS_00033041 False 1124 mRNA 0.43 7 51281856 51316195
TCONS_00033043 False 1331 mRNA 0.40 11 51307965 51316190
TCONS_00033044 True 670 mRNA 0.43 3 51314851 51316187

Neighbor

gene id symbol gene type direction distance location
XLOC_016893 si:ch211-215e19.4 coding downstream 5906 51273795 ~ 51275873 (-)
XLOC_016892 si:ch211-215e19.6 coding downstream 22401 51251589 ~ 51259378 (-)
XLOC_016891 pigrl4.2 coding downstream 58121 51220283 ~ 51223658 (-)
XLOC_016890 NA coding downstream 74332 51175997 ~ 51207447 (-)
XLOC_016889 them6 coding downstream 172303 51098549 ~ 51109476 (-)
XLOC_016896 si:dkeyp-104b3.21 coding upstream 5578 51321773 ~ 51330642 (-)
XLOC_016897 NA coding upstream 14857 51331052 ~ 51368890 (-)
XLOC_016898 NA coding upstream 53033 51369228 ~ 51372091 (-)
XLOC_016899 si:dkeyp-104b3.18 coding upstream 67782 51383977 ~ 51388214 (-)
XLOC_016900 NA coding upstream 82392 51398587 ~ 51407308 (-)
XLOC_016884 NA non-coding downstream 491181 50774409 ~ 50790598 (-)
XLOC_016882 CABZ01053221.2 non-coding downstream 572297 50709366 ~ 50709482 (-)
XLOC_016880 CABZ01067968.1 non-coding downstream 808237 50473426 ~ 50473542 (-)
XLOC_016870 NA non-coding downstream 1488359 49792207 ~ 49793420 (-)
XLOC_016901 NA non-coding upstream 93036 51409231 ~ 51409948 (-)
XLOC_016902 BX677667.2 non-coding upstream 99308 51415503 ~ 51415811 (-)

Expression


Co-expression Network