XLOC_016887 (ftr67)


Basic Information

Item Value
gene id XLOC_016887
gene name ftr67
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51065777 ~ 51087077 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033030
GCATAAACAAAGCTCTCGGCTGGGCTTCGTTCTGCCACAAACCTGCTAAAATGGCGCAAGCTGGGGTTTTCCTAGAGCACGACCAGTTCAACTGCTCCATCTGCCTGGACGTCTTGAAGGACCCTGTCACCATTCCATGCGGCCACAGCTACTGCAAAGGCTGCATTAAGAACTACTGGGACCAGGATGACTACCTGGGGATCTATGGCTGTCCTCAGTGCAGGCAAAGCTTCGCTCCCAGACCTTTGCTGGGCAGAAACACAATGCTAGCCGATGTTGTGGAGAAATTGAAGAAGACAGGACTGCACGCTGGACCCGCAAGCGATCCAACACAAGCCGAGCCTGGAGATGTTGAGTGCGACGTTTGCTCGGGGACCAAAAACAAAGCCTTCAAATCCTGCCTGGTGTGCTTGGCGTCGTACTGCGAGACTCACCTTCAGCCGCACTACGAGTCCCCTGCCTTTCAGAAACACAGGCTGGCTTCTCCCTCAAAGAAGATGCAGGAGCAGCTGTGCTCGCGACACGATAAACTACTGGAGGTGTTCTGCCGCACGGATCAGCAGTGCATTTGTTACCTTTGTTTAACGGATGAGCACAAAGGACACGACACCGTTCTGGCAACAGCGGAGATGAATGAGAAGAAGAATGCTTTGCTGGAGATGCGCAGGGTTTCCCAGCGGAGGATTGAGGAGCGGGAGAAGGAGCTGGCAGATCTCAGACAGGCCACACAGATGCTCACgCTGTCGGCTCAGACGGCCCTGGAGGAGAGCGAGCGTGTCTTCACAGAGCTGGTGTGCTCGGTGGAGCGGCGGCGTGCTGAAGTGAAAGAGCTGATCCGGGGTCAGGAGAGGGCGGCAGTGAGTCAAGCTCAAACGCTCCTCCAACAACTGGAGCAGGAGATAACCGAGCTGAAGAAGAGACACGCTGAATTAGGAGAGCTCTCGCAAACAGACGACCATATCGCCTTTCTTCAGAACTGCAAGTCTCTGTGTGCTCAGCCGGTGTCTGTTGAGCTGCCCAGCATCACCTCTGAGCCAAACTTCACCAGCGTGATCGCGGCCGTGACCGAGTTTCAGTCTCTCCTGGAGGACGTCTGCCAGGGAGGATTTGTCAGCATCTCGGAGAAAGTGGATGATGTCACTATTATTCAGAACACAATACCAAAGACGGATTTGGAGTCAAATACAGCACCAGTGTTTGGCCAGACAGCACAGATCCCTTTCACCATCAATGTCCCGACAATCAGTGTGTTTCCATTCTCGTCTTTTGGCTCGAGAACTCAAGGTCCTCGTCAGAGACTGCAGCCCCGCAGGAGACGCCGGTAGCCTTCACATCGCCTGAGAAATGCCTGATCAATTCAGTCAAAAGGCCAAAGTCAGTTTGCCAGAGTTTTGTTTTTTGAACCTGTACATTATGTTCAAAAGTAAAGCTACACTAACTACAAACTCTCACTACTAAATGAGACAGAAATGTAAAGCCAGATGCGTTTCAGTGTCTGCGGTCCGAGTCTCAACGCTATCAACTCAATATATCTTACAAATACAGATGTGCTTGGAGTGAAAGTTTAAATATTGTGTGATATacgaaaaaaaaagttttaattattttaaaacaactatCTTTTGACTAAGCTGTAATTATTTTGCAAAGTATTAATCATTACACATAATATAGAGTGTTATATTGGTGTATTTTATCAGTGTTTAATCCACTGATGTCGTCTTATCTATTCACAGAAGTGTTGATTTTAGCTTCATGCGTGTggaatgtatttgtgtgtattaaACTATGTTTAAATTGAAGCATTTTAAACTTAAAAGCTTATTTTTCATATCATGAAAAATAAAGATTCTTCCCAGCAGA

Function

symbol description
ftr67 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm. Is expressed in brain; gill; liver; muscle; and pleuroperitoneal region.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-27 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm. Is expressed in brain; gill; liver; muscle; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000098820

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033030 True 1863 mRNA 0.48 7 51065777 51087077

Neighbor

gene id symbol gene type direction distance location
XLOC_016886 ftr87 coding downstream 6086 51037175 ~ 51059691 (-)
XLOC_016885 ghrhra coding downstream 99653 50906097 ~ 50966124 (-)
XLOC_016884 NA coding downstream 275179 50774409 ~ 50790598 (-)
XLOC_016883 xcr1b.1 coding downstream 346607 50718112 ~ 50719170 (-)
XLOC_016882 CABZ01053221.2 coding downstream 356295 50709366 ~ 50709482 (-)
XLOC_016888 THEM6 coding upstream 1371 51088448 ~ 51096647 (-)
XLOC_016889 them6 coding upstream 11472 51098549 ~ 51109476 (-)
XLOC_016890 NA coding upstream 88920 51175997 ~ 51207447 (-)
XLOC_016891 pigrl4.2 coding upstream 133206 51220283 ~ 51223658 (-)
XLOC_016892 si:ch211-215e19.6 coding upstream 164512 51251589 ~ 51259378 (-)
XLOC_016880 CABZ01067968.1 non-coding downstream 592235 50473426 ~ 50473542 (-)
XLOC_016870 NA non-coding downstream 1272357 49792207 ~ 49793420 (-)
XLOC_016869 BX284666.2 non-coding downstream 1296225 49767578 ~ 49769552 (-)
XLOC_016895 NA non-coding upstream 212251 51299328 ~ 51303937 (-)
XLOC_016897 NA non-coding upstream 243975 51331052 ~ 51368890 (-)
XLOC_016898 NA non-coding upstream 282151 51369228 ~ 51372091 (-)
XLOC_016900 NA non-coding upstream 311510 51398587 ~ 51407308 (-)

Expression


Co-expression Network