RNA id: TCONS_00033961


Basic Information

Item Value
RNA id TCONS_00033961
length 1591
lncRNA type read_through
GC content 0.30
exon number 1
gene id XLOC_016895
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51299328 ~ 51303937 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTCTGTGGTGAGCAGCAGTGTATCTGGATATGAAGGTGATGATGTCAGTGTCCAGTGTTTCTACAGTAATGTATACAGGAATAGAAAGAAACAGTGGTGCAAAATTAAAGATAAGAGCTGTAACTTAGTGAAGAGATCTGACACATACCAGTATTCATCAGTGCAGATCAGAGATTATGGTAAAAGCTCCTTCACTGTGCTGATGACTGGACTGAGACTCTCTGATTCTGGATGGTATTTCTGCTCTGCTGGAGATCTGCAGGTTCCTGTTCATCTCAGTCACTAAACCTATACCTAAAAGTAAGATAAGATTACAAACCACACAATTATGATTTCCTAATTCTGCTGTGAAAATTatgattttctaaaaaaaaaaaaaatgccttttttgttgttcttttttttccaacaccTATTCCAGCAACTACCACTAAGACAGAAACGTAAGTGTAAACATATTAATCAAACACATTCAAGttttaacagagtgtaaaaacaagtgtatatactgtatgctgttCATGTGAAATGTTATCAGTGAACTGTCACactaatgtgtgtttgtgagtgattTACTAAATCAGCCTAATCAATCGTGTATTCATTTCTATACTTATATTTTTCCATGACACAAATTGAACTGTGACATaactattatttttctttttttttgcagaaacacAACACAGCCATCTGCCAACACGACTCCTACAAATatgcagacaataaaaagtaAGCAACAGCTAAATTGAATTAATCAGTAATtgttaaagaattttaaaaaatctgaattacaCTTAAACAATCATAATGAGTTTAGCAGTTTAGTTATGTTTTACTGTacgcaatatttttttaataaataactgtaaatCATATAACTCATCTCATCAGTATGAACTTTAGCTCATAGGTTTTATAATTTAgctcaaaaacattttatattattgatttaCAGTGTATATGTTTAATGTCTTCAATGTCTTCAAAAAAGCATAGTGAAAATATTGACACTTTTTGGacagtttaatatatatatattatattgtacttattttttttcccttaatCATTAAACATTTTCTCATAGCCAATATCTATATCATATTGAATATTTGGACTGATTTTCTGGATAAGTCAGAGTTATGCACTAAAGAATTTATGAGGAGAAAACTGGATAATATCAGAATTTAATAAAAACGTAAAGTTCAAAGTTGCCTTCTgactattttatttagctttttgcgGAAACAGGCTTTTATACAGTTGCTTTAATGAAATGAACAacgtattatttatattttttatcaatttctgcTACTAGCTGCAGCTTAAACTACTGAGTCAAGACGTGAAGCACACGTGTAAGtgtgaatattattatatatactgtgaatattattaataattgatattgtcatatttatttttgtttatttattattgtaatgtaattttCAGTTCCAGAGACTCAGAGACTAACACTGGAAAAGACAACAAGAATGAACAAAACAagtatttaagactttttcagtGTGCATTTGCTTGAATTAAGTCTCTATATTAGAAGCAAAATCTTCAAAGATGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033960 lncRNA downstream 91881 51175997 ~ 51207447 (-) True XLOC_016890
TCONS_00033959 lncRNA downstream 109621 51175997 ~ 51189707 (-) False XLOC_016890
TCONS_00033958 lncRNA downstream 508730 50790093 ~ 50790598 (-) True XLOC_016884
TCONS_00033957 lncRNA downstream 508747 50774409 ~ 50790581 (-) False XLOC_016884
TCONS_00033021 lncRNA downstream 1027303 50254255 ~ 50272025 (-) True XLOC_016878
TCONS_00033414 lncRNA upstream 30134 51331052 ~ 51368890 (-) True XLOC_016897
TCONS_00033415 lncRNA upstream 68310 51369228 ~ 51372091 (-) True XLOC_016898
TCONS_00033962 lncRNA upstream 97669 51398587 ~ 51407308 (-) False XLOC_016900
TCONS_00033416 lncRNA upstream 104682 51405600 ~ 51407126 (-) True XLOC_016900
TCONS_00033963 lncRNA upstream 108313 51409231 ~ 51409948 (-) True XLOC_016901
TCONS_00033040 mRNA downstream 8721 51281779 ~ 51290607 (-) False XLOC_016894
TCONS_00033039 mRNA downstream 23455 51273795 ~ 51275873 (-) True XLOC_016893
TCONS_00033036 mRNA downstream 39950 51251589 ~ 51259378 (-) False XLOC_016892
TCONS_00033037 mRNA downstream 39957 51257170 ~ 51259371 (-) False XLOC_016892
TCONS_00033038 mRNA downstream 39957 51257338 ~ 51259371 (-) True XLOC_016892
TCONS_00033043 mRNA upstream 7047 51307965 ~ 51316190 (-) False XLOC_016894
TCONS_00033044 mRNA upstream 13933 51314851 ~ 51316187 (-) True XLOC_016894
TCONS_00033045 mRNA upstream 20855 51321773 ~ 51330642 (-) False XLOC_016896
TCONS_00033046 mRNA upstream 23079 51323997 ~ 51330414 (-) True XLOC_016896
TCONS_00033047 mRNA upstream 83059 51383977 ~ 51388214 (-) False XLOC_016899
TCONS_00033026 other downstream 589846 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033024 other downstream 825786 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033003 other downstream 1529776 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033002 other downstream 1632279 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00032992 other downstream 2552516 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00033049 other upstream 114585 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033050 other upstream 128255 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033052 other upstream 157195 51458113 ~ 51458228 (-) True XLOC_016905
TCONS_00033068 other upstream 436179 51737097 ~ 51741713 (-) False XLOC_016919
TCONS_00033071 other upstream 437768 51738686 ~ 51748935 (-) False XLOC_016919

Expression Profile

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