RNA id: TCONS_00033414


Basic Information

Item Value
RNA id TCONS_00033414
length 1428
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_016897
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51331052 ~ 51368890 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAAACCAAATGACATCTATCAGTCCTGCAGAAGCTGATGTAAGTCCTCATCCTTCATTCTGTCTGCTTTATAACTCTCAGAAGGCACTGAGATGCTGAACTCGGATCAGTGATGGTCAGTTGTGTTTGTTCACAGTCTTCTGCAGATGGCGGTTCTGTAGTTTACTGTCCTGTCTCCTTCACAAAGACACATTTATCATCAGTGAATCCAGAAGCTGATGTGATCTACAGTGCTGTGGCATAAAATTACAAAACTGGAATAATGCAGCATTAACTCATGACTAAATGGAGGATGAAGGCGACACATCAGCGTTTTAAAAGAAAATGGATCCTTCTGTAATATTTCTTCTCCTCTTTAATCTTAATTCCAAATGATTCTAAAGAAAATTGAGCAGTTTAGTTTTGCtaaaaaacacaataacaaaacaaacaaaccaatgtgAGTTTGACTCCCCTGTTTTAGAGCGGTGTAAATGCAAGTTTTGTAAGattttggtaaataaataaatagaatattcTATTGGGGGCGAAGCAGTGACACAGTAGgtaggaagggcatccgctgcataaaaacttgctagaaaagttggcggttcattccgctgcggtgaccccggattaataaagggaccaagccgacaagaaaattaatgaatattctaTATGGATTTTaattgtacagtaaaaaaaaagcatCCACAATAAATTAGTCTGTGCTGTTTCATCTACTGTATGTGTGGTGTCATTTGTTGGTGATTTTTACTTCTTACACCCAAAATATGAGCAATATTTGTATCAGAGCTTTATTTCTGCTTATTAATTTTCTACCAGCAAAATGTAAAGCAGTCTATTGTATTTGCAATGCCGAGACATGTCTAAACTCCTCTCATGTGTGATGTCTGTGTTTCTATAGTAGACCTTTCAGGCCATGTCCACCGAACAGGGAATTAAACATTTGATTATTTACTTTCCCTGATGTTATGAACTTAGTTTATTTTAAGTGGACTCAAATGAGCTAACAGATCTTATGTTCAAGACTGATGAAAATTCAACAGCTTTTTCAATAAACTGTGTACACTATGATGAGAGTTTCTGTCttccactcttttttttttttcaaaaataagtgCAGTTTTTCATGTGTATAATACCATTTGGACTTCTCAAATTTAATTATGCATGTAGTTTTGTTGTTGTCCTCTTTATGGCACTGTGATTGGAGCACCAGTGTGTGTGTTACAATAATAAAGGATAAACTCAGAACCTGAAGGTGCTAAAAATAGTATTGAAAGAAAGTTGATTGAGCAGAACAAACaatgagaaaatgctgtttttattaaTGGCAGAACATTGTCAGCAAGGAATTAGGCTTTTTATGTAATAAATCaagaattttatataaaacttgataaaaaatacaaataaa

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033961 lncRNA downstream 30134 51299328 ~ 51300918 (-) False XLOC_016895
TCONS_00033960 lncRNA downstream 123605 51175997 ~ 51207447 (-) True XLOC_016890
TCONS_00033959 lncRNA downstream 141345 51175997 ~ 51189707 (-) False XLOC_016890
TCONS_00033958 lncRNA downstream 540454 50790093 ~ 50790598 (-) True XLOC_016884
TCONS_00033957 lncRNA downstream 540471 50774409 ~ 50790581 (-) False XLOC_016884
TCONS_00033415 lncRNA upstream 338 51369228 ~ 51372091 (-) True XLOC_016898
TCONS_00033962 lncRNA upstream 29697 51398587 ~ 51407308 (-) False XLOC_016900
TCONS_00033416 lncRNA upstream 36710 51405600 ~ 51407126 (-) True XLOC_016900
TCONS_00033963 lncRNA upstream 40341 51409231 ~ 51409948 (-) True XLOC_016901
TCONS_00033964 lncRNA upstream 105023 51473913 ~ 51475418 (-) False XLOC_016907
TCONS_00033045 mRNA downstream 410 51321773 ~ 51330642 (-) False XLOC_016896
TCONS_00033046 mRNA downstream 638 51323997 ~ 51330414 (-) True XLOC_016896
TCONS_00033041 mRNA downstream 14857 51281856 ~ 51316195 (-) False XLOC_016894
TCONS_00033043 mRNA downstream 14862 51307965 ~ 51316190 (-) False XLOC_016894
TCONS_00033044 mRNA downstream 14865 51314851 ~ 51316187 (-) True XLOC_016894
TCONS_00033047 mRNA upstream 15087 51383977 ~ 51388214 (-) False XLOC_016899
TCONS_00033048 mRNA upstream 15108 51383998 ~ 51384714 (-) True XLOC_016899
TCONS_00033051 mRNA upstream 82213 51451103 ~ 51454868 (-) True XLOC_016904
TCONS_00033053 mRNA upstream 92490 51461380 ~ 51468756 (-) True XLOC_016906
TCONS_00033054 mRNA upstream 108310 51477200 ~ 51480324 (-) True XLOC_016908
TCONS_00033026 other downstream 621570 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033024 other downstream 857510 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033003 other downstream 1561500 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033002 other downstream 1664003 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00032992 other downstream 2584240 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00033049 other upstream 46613 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033050 other upstream 60283 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033052 other upstream 89223 51458113 ~ 51458228 (-) True XLOC_016905
TCONS_00033068 other upstream 368207 51737097 ~ 51741713 (-) False XLOC_016919
TCONS_00033071 other upstream 369796 51738686 ~ 51748935 (-) False XLOC_016919

Expression Profile

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