XLOC_016919 (si:ch211-9d9.1)


Basic Information

Item Value
gene id XLOC_016919
gene name si:ch211-9d9.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51737097 ~ 51757328 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033068
ATCTCAGCCGGTGTGTTTATTTCCCGTGCAGCGCGTTCTAGATGTGTACTACTAGCTGCAAAACCCTTTCATTCAGCAATTTGACGGCGAATTTATTAATGAACTATAATAGCAATGACTACCAGAAGGTATAAATATCAACGGCGGATTGACAGTAGTTCATCTGAACATTGTTGTGTGCCGTTATGTGGAGCTTCATCGAGATTCAACTCCGCGGTGAGTTTCCACACGTTTCCGGTGTCCACGGAAATACGTGAAAAATGGATTAAAAACATTCGACGTGAGAAACTTAACATCACATATCACACGAGGGTCTGCTGTCGACATTTTACTACTGATGATCTGATTCAGCCACGTAATCCCATAGGGAGGCGTTTGTTGAGGAAAGGGGCAGTTCCCACATTATTCAAGTGGAATGGATACTCAGATGCTGAAGCAAAGAAGGCCGCAGATTTAGAGCATTCTGTGACAATAAAGGAGATTTACAGTCAAGGGGACATCCACCATCTAGAACACGATTACTGTTCAGTTCCGGAAACTACGACGGCAGATAATGGACCGGATCCAGTTAAAGAGCTCCGTGAAGAGGTGGAGCGACTGAGGAGACAGGTGGAGGAGATGTCTGTCAGTCAAAGATTTTGTTTGGGGCGTTTTGCTGCTTCTGACGATGATATCAAGTTCTACACACGGTTCACAACTTGCAGCCATTTAATGGCATTCTGGAAGCTCATTGAACCTGCATCCAACAACATGATTCGGGTGTCCAGAGTAAGAGCAGCAACCATGAAGCATGAAGATGGAATGACAGACGGTGCATTG
>TCONS_00033069
ATGTCggctgcaaaaaataaacaaacaaacattaaacatgtcgtgttgtgcggtaggatgccggaACCGATTGTCCCATAACAAAAAACTGAAATTTTACCGTATACCATCTGCCCACACTGCTTTCAATGctaaccgcagacgtctttggctagcAGCCATCAAAAGAGTCGACTGGAGTGAggagaaaattaaaaatgctcgactctgcagtgcacatttcatatcaggAGAGGCATCCTTGGACTATGATAGTCCTGACTTTGCCCCTTCAGTGTTCTCTCATACAACCCAGCGTGAATTAAACAAAGGCAATGCAAAGCTTGAGAGATTTAAGAGGAAAAGGAAACGGGATGAAAACACGTGCAGACCACCTGGTTTACAGCCTTCCAAAGGAATGAATAATGAAGTTGCAGCAGGAACCTCAGGAGCTCGCCTGTCTACAGATGCCTGCAGAATAGAGTCAGAGCATTCTGTGACAATAAAGGAGATTTACAGTCAAGGGGACATCCACCATCTAGAACACGATTACTGTTCAGTTCCGGAAACTACGACGGCAGATAATGGACCGGATCCAGTTAAAGAGCTCCGTGAAGAGGTGGAGCGACTGAGGAGACAGGTGGAGGAGATGTCTGTCAGTCAAAGATTTTGTTTGGGGCGTTTTGCTGCTTCTGACGATGATATCAAGTTCTACACACGGTTCACAACTTGCAGCCATTTAATGGCATTCTGGAAGCTCATTGAACCTGCATCCAACAACATGATTCGGGTGTCCAGAGTAAGAGCAGCAACCATGAAGCATGAAGATGGAATGACAGACGGTGCATTG
>TCONS_00033070
CTCAGCCGGTGTGTTTATTTCCCGTGCAGCGCGTTCTAGATGTGTACTACTAGCTGCAAAACCCTTTCATTCAGCAATTTGACGGCGAATTTATTAATGAACTATAATAGCAATGACTACCAGAAGGTATAAATATCAACGGCGGATTGACAGTAGTTCATCTGAACATTGTTGTGTGCCGTTATGTGGAGCTTCATCGAGATTCAACTCCGCGGTGAGTTTCCACACGTTTCCGGTGTCCACGGAAATACGTGAAAAATGGATTAAAAACATTCGACGTGAGAAACTTAACATCACATATCACACGAGGGTCTGCTGTCGACATTTTACTACTGATGATCTGATTCAGCCACGTAATCCCATAGGGAGGCGTTTGTTGAGGAAAGGGGCAGTTCCCACATTATTCAAGTGGAATGGATACTCAGATGCTGAAGCAAAGAAGGCCGCAGATTTAGAGCATTCTGTGACAATAAAGGAGATTTACAGTCAAGGGGACATCCACCATCTAGAACACGATTACTGTTCAGTTCCGGAAACTACGACGGCAGATAATGGACCGGATCCAGTTAAAGAGCTCCGTGAAGAGGTGGAGCGACTGAGGAGACAGGTGGAGGAGATGTCTGTCAGTCAAAGATTTTGTTTGGGGCGTTTTGCTGCTTCTGACGATGATATCAAGTTCTACACACGgactcccagagttcatcaagattctttggattcatctttaaagcCTCCTCCATTGCCCCATTTATGCTTAATactgttcatgtctggtgactgggctggccaatcctggagcaccttgac
>TCONS_00033071
GCACtctaaagtaaatttttttaatcaatgttatattttttttgtacaggAGAGGCATCCTTGGACTATGATAGTCCTGACTTTGCCCCTTCAGTGTTCTCTCATACAACCCAGCGTGAATTAAACAAAGGCAATGCAAAGCTTGAGAGATTTAAGAGGAAAAGGAAACGGGATGAAAACACGTGCAGACCACCTGGTTTACAGCCTTCCAAAGGAATGAATAATGAAGTTGCAGCAGGAACCTCAGGAGCTCGCCTGTCTACAGATGCCTGCAGAATAGAGTCAGAGCATTCTGTGACAATAAAGGAGATTTACAGTCAAGGGGACATCCACCATCTAGAACACGATTACTGTTCAGTTCCGGAAACTACGACGGCAGATAATGGACCGGATCCAGTTAAAGAGCTCCGTGAAGAGGTGGAGCGACTGAGGAGACAGGTGGAGGAGATGTCTGTCAGTCAAAGATTTTGTTTGGGGCGT
>TCONS_00033072
AATAATGAAGGTTCTGCTGCTGGCTCTTGTTCTCGCACTGGTGTTTGCCAACGCTTTGCTGTATCGACCCTGACAGCAGTTTGTGTGCtacataacaaataacaaatgtagcaggacattacattacttagacctgaaccaaaagtggggggtttcatagccctttaaggcTCTTCCTTGACATGTCACAGATGTATCCCTGACATACCTGGAGGAAACTGCGGGTTCACTGAAGAGACCTGTGTCAACGATCAAAATGCGTGTGTAGCTGTCGCCTACAAGAAATTTCCCTATTCCTACTTCCGGAGGTGCATCAACATGGAAGACTGCTCGGCTCTTGAGTCCAATCGCCATTTATATGCCAGATGCTGTCAGACGGATCTCTGCAATTAACCAACCCATCATCTAAACCCACAGAACACAAAGGAAAAGTGTGGCATTTAAGAGCAGGTCATCGGATAGCTGGGGCGGATTTAACATTTAAGCCAGgAGAGGCATCCTTGGACTATGATAGTCCTGACTTTGCCCCTTCAGTGTTCTCTCATACAACCCAGCGTGAATTAAACAAAGGCAATGCAAAGCTTGAGAGATTTAAGAGGAAAAGGAAACGGGATGAAAACACGTGCAGACCACCTGGTTTACAGCCTTCCAAAGGAATGAATAATGAAGTTGCAGCAGGAACCTCAGGAGCTCGCCTGTCTACAGATGCCTGCAGAATAGAGTCAGAGCATTCTGTGACAATAAAGGAGATTTACAGTCAAGGGGACATCCACCATCTAGAACACGATTACTGTTCAGTTCCGGAAACTACGACGGCAGATAATGGACCGGATCCAGTTAAAGAGCTCCGTGAAGAGGTGGAGCGACTGAGGAGACAGGTGGAGGAGATGTCTGTCAGTCAAAGATTTTGTTTGGGGCGT
>TCONS_00033073
aaacaaacaaacattaaacatgtcgtgttgtgcggtaggatgccggaACCGATTGTCCCATAACAAAAAACTGAAATTTTACCGTATACCATCTGCCCACACTGCTTTCAATGctaaccgcagacgtctttggctagcAGCCATCAAAAGAGTCGACTGGAGTGAggagaaaattaaaaatgctcgactctgcagtgcacatttcatatcaggAGAGGCATCCTTGGACTATGATAGTCCTGACTTTGCCCCTTCAGTGTTCTCTCATACAACCCAGCGTGAATTAAACAAAGGCAATGCAAAGCTTGAGAGATTTAAGAGGAAAAGGAAACGGGATGAAAACACGTGCAGACCACCTGGTTTACAGCCTTCCAAAGGAATGAATAATGAAGTTGCAGCAGGAACCTCAGGAGCTCGCCTGTCTACAGATGCCTGCAGAATAGAGTCAGGTATTGGTCTTTGCACTGGTGAGAACTTCTAATCTCCCAACTAAACAgcgatacatttacatttttggattaTTTGACGAGGATCAGTTTCCAAGAGGCTATGAAGCAAGAAAGAAATCTTTTCAGCACTGATGACAAATGTAAG
>TCONS_00033074
AATAAACTGCcaatttcttaataataggcaggtaatacgcAGGAAAACTGAGAAAATGTCCTTAAATTAAAGTGCTACCAATTCTGAACACAGTGAAAATAAGTGTTTGATGGAAAGCCTGAATTAAACTATAAGCAAATCTATCACTCAATGGAATGTAGACATATGACATATTCATAATCACTATGATTGACCAGGATTTTGATTTTCCTCAACAGAATAATGAAGGTTCTGCTGCTGGCTCTTGTTCTCGCACTGGTGTTTGCCAACGgcTCTTCCTTGACATGTCACAGATGTATCCCTGACATACCTGGAGGAAACTGCGGGTTCACTGAAGAGACCTGTGTCAACGATCAAAATGCGTGTGTAGCTGTCGCCTACAAGAAATTTCCCTATTCCTACTTCCGGAGGTGCATCAACATGGAAGACTGCTCGGCTCTTGAGTCCAATCGCCATTTATATGCCAGATGCTGTCAGACGGATCTCTGCAATTAACCAACCCATCATCTAAACCCACAGAACACAAAGGAAAAGTGTGGCATTTAAGAGCAGGTCATCGGATAGCTGGGGCGGATTTAACATTTAAGCCAGGTAGGTGGTTACTGCGCAAAGGCTGCGAGAGCGTCAAAGGTCGCTTTGGCCGCCTTcacgacaacgctgtctgccttcagctccagcGGTGAAAGCGTCAAAATTCGCTTCGTCAtgaagttgacttgatttcaactctcctcgacgcccacaccggcgaagacgcgccgcacTGCTCCTTGCCGCTTCTCGCCGCTTATTGCCGCCGGCTCtcgttgaaaatgaatgacttccggctgcTTTGACACTCTCGCCGCTTTCTGTGTGAACATACGGTTAGGGCCCCAAGAAATCATGTGGCCCCAGTAAACACCTATTCATTAAACATAGATTGAGGATAAGCACTATTCACTATTATAGCATAGGCTTTTTGTGGTtgtttaaagggcatctatggtgaaaaatctacttttcaagctgtttggacagacgtgtgtagaaAAAATATACTCTCATAagacaaatataaaatgtaaagtgATTTCTGCAGCACATATAGCACTTAATCATTGTTTTCAGATGATCTGCTCATCTCTCTCTACCTCTCATCAGCACTAATGAAAATAGTTGCAACTAGCTATCACAACATCAaatgctcacggggctgcgagagaataaataagaagagcggagcgaGACAGGAGTGAGGctatgatcaaataaataaaaaaaaaagtgtgactgcgaCTTTCTCCGTTCgtcatgctggagaggaacagtctgcgcaaatggAGCGTAGAGTGGGTGTCATCGACTACAGcgctcatctgattggctgaaaggtacgagttgccCTGCCTCTGCCTGgacagtctcaaaaatacacacacacgtatccagggggagtcgtacgtgaaagaggatttgcacattcccATTCAGGATGAAcgcgcaagttttaaacattcaaaactttttgtacactcttatacatttgcaaatggtgttttgcatttgtgaaacgtattttaagaaaatttatttttatttagtgcacatgaaatttttttgtgaatataaataaatattttacgcacgtgaatttggctacgcatgtgtacatcgtgtcttttgcgtgaattactaTTGAGTCTTTTCTGACTCCATAGTAATGCACCAAGAAGTTGTATACCAACCGCTAATAAAACTCAGAAGAAGTGACCGGCGGCGTCTCTCTCTGAATCGTAGATGGTGTGACCGCAGTGAAATCTTTGTGTTGTTTCCAATGTTTTGCAATAATCAATGTCTTTCCTGGCATTACGGCTGAATAAATATCCGTAATGTGAACATCGAGATGCACAACAGCGGTGAATGTTTGCTGATGGTTAAGTTCATTGACggaacaaaaaagaaatgcaaccctTGCAACAAAACTAGTTATTATTGTGAAGCACTTTCTCttccttacaaaaataaataagtattgcattaataataattaataagtaaTGCTGACTAACCGTCCGCGCTTTTGtttgctttcatctgttatttcttgATGTCTGGAAAATATCTGCATGGGgaaaactatagtaattcataatagacatgtttttgaaccacataggAAAGTctataatgtgtacaactctttgttagCGCATGCTACAGAATAATGTAccatagtaaactgataaactgtaataaatactgtaaagttTGTGTAAACTGGTTCATTG
>TCONS_00033075
AATAATGAAGGTTCTGCTGCTGGCTCTTGTTCTCGCACTGGTGTTTGCCAACGCTTTGCTGTATCGACCCTGACAGCAGTTTGTGTGCtacataacaaataacaaatgtagcaggacattacattactgcTCTTCCTTGACATGTCACAGATGTATCCCTGACATACCTGGAGGAAACTGCGGGTTCACTGAAGAGACCTGTGTCAACGATCAAAATGCGTGTGTAGCTGTCGCCTACAAGAAATTTCCCTATTCCTACTTCCGGAGGTGCATCAACATGGAAGACTGCTCGGCTCTTGAGTCCAATCGCCATTTATATGCCAGATGCTGTCAGACGGATCTCTGCAATTAACCAACCCATCATCTAAACCCACAGAACACAAAGGAAAAGTGTGGCATTTAAGAGCAGGTCATCGGATAGCTGGGGCGGATTTAACATTTAAGCCAGGTAGGTGGTTACTGCGCAAAGGCTGCGAGAGCGTCAAAGGTCGCTTTGGCCGCCTTcacgacaacgctgtctgccttcagctccagcGGTGAAAGCGTCAAAATTCGCTTCGTCAtgaagttgacttgatttcaactctcctcgacgcccacaccggcgaagacgcgccgcacTGCTCCTTGCCGCTTCTCGCCGCTTATTGCCGCCGGCTCtcgttgaaaatgaatgacttccggctgcTTTGACACTCTCGCCGCTTTCTGTGTGAACATACGGTTAGGGCCCCAAGAAATCATGTGGCCCCAGTAAACACCTATTCATTAAACATAGATTGAGGATAAGCACTATTCACTATTATAGCATAG
>TCONS_00033077
AATAATGAAGGTTCTGCTGCTGGCTCTTGTTCTCGCACTGGTGTTTGCCAACGtagacctgaaccaaaagtggggggtttcatagccctttaaggcTCTTCCTTGACATGTCACAGATGTATCCCTGACATACCTGGAGGAAACTGCGGGTTCACTGAAGAGACCTGTGTCAACGATCAAAATGCGTGTGTAGCTGTCGCCTACAAGAAATTTCCCTATTCCTACTTCCGGAGGTGCATCAACATGGAAGACTGCTCGGCTCTTGAGTCCAATCGCCATTTATATGCCAGATGCTGTCAGACGGATCTCTGCAATTAACCAACCCATCATCTAAACCCACAGAACACAAAGGAAAAGTGTGGCATTTAAGAGGTGCATATCACAGAATTAATCAGTAGTATTATGTGGTTGTATAGGCACATAATGATTATGTATATGGTGATCTCACTAATTCATTTAGTTTTCAAAATGcttcaaataaaaacaattattaaaaaat
>TCONS_00033076
AATAATGAAGGTTCTGCTGCTGGCTCTTGTTCTCGCACTGGTGTTTGCCAACGgcTCTTCCTTGACATGTCACAGATGTATCCCTGACATACCTGGAGGAAACTGCGGGTTCACTGAAGAGACCTGTGTCAACGATCAAAATGCGTGTGTAGCTGTCGCCTACAAGAAATTTCCCTATTCCTACTTCCGGAGGTGCATCAACATGGAAGACTGCTCGGCTCTTGAGTCCAATCGCCATTTATATGCCAGATGCTGTCAGACGGATCTCTGCAATTAACCAACCCATCATCTAAACCCACAGAACACAAAGGAAAAGTGTGGCATTTAAGAGGTGCATATCACAGAATTAATCAGTAGTATTATGTGGTTGTATAGGCACATAATGATTATGTATATGGTGATCTCACTAATTCATTTAGTTTTCAAAATGcttcaaataaaaacaattattaaaaaat

Function

symbol description
si:ch211-9d9.1 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to act upstream of or within negative regulation of activation of membrane attack complex.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2657 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to act upstream of or within negative regulation of activation of membrane attack complex.

Ensembl:

ensembl_id ENSDARG00000099839

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033068 False 819 processed_transcript 0.45 3 51737097 51741713
TCONS_00033069 False 829 lncRNA 0.45 5 51737097 51749359
TCONS_00033070 False 807 mRNA 0.45 3 51738261 51741711
TCONS_00033071 False 480 processed_transcript 0.44 3 51738686 51748935
TCONS_00033072 False 920 lncRNA 0.47 9 51738686 51757110
TCONS_00033073 False 594 processed_transcript 0.43 3 51746255 51749341
TCONS_00033074 False 2270 mRNA 0.41 4 51750761 51757328
TCONS_00033075 False 813 processed_transcript 0.49 5 51752075 51757110
TCONS_00033077 False 499 lncRNA 0.41 4 51752508 51757110
TCONS_00033076 True 458 processed_transcript 0.41 3 51752508 51757110

Neighbor

gene id symbol gene type direction distance location
XLOC_016918 tgm1l1 coding downstream 17658 51665527 ~ 51719439 (-)
XLOC_016917 dad1 coding downstream 93053 51640591 ~ 51644044 (-)
XLOC_016916 pigr coding downstream 102666 51613453 ~ 51634431 (-)
XLOC_016915 si:ch211-9d9.8 coding downstream 125753 51610584 ~ 51611344 (-)
XLOC_016914 si:ch211-9d9.7 coding downstream 143262 51592392 ~ 51593835 (-)
XLOC_016920 BX908782.2 coding upstream 7851 51765179 ~ 51772438 (-)
XLOC_016921 ly97.2 coding upstream 16734 51774062 ~ 51777238 (-)
XLOC_016922 ly97.3 coding upstream 33166 51790494 ~ 51794472 (-)
XLOC_016923 BX908782.1 coding upstream 92829 51850157 ~ 51850271 (-)
XLOC_016924 scn12aa coding upstream 130705 51888033 ~ 52020049 (-)
XLOC_016909 NA non-coding downstream 252773 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 260042 51473913 ~ 51477055 (-)
XLOC_016905 BX677667.3 non-coding downstream 278869 51458113 ~ 51458228 (-)
XLOC_016903 BX677667.1 non-coding downstream 307607 51429173 ~ 51429490 (-)
XLOC_016902 BX677667.2 non-coding downstream 321286 51415503 ~ 51415811 (-)
XLOC_016925 NA non-coding upstream 343662 52100990 ~ 52103610 (-)
XLOC_016926 NA non-coding upstream 444791 52202119 ~ 52204072 (-)
XLOC_016929 NA non-coding upstream 708207 52465535 ~ 52468939 (-)
XLOC_016931 NA non-coding upstream 870924 52628252 ~ 52681788 (-)

Expression


Co-expression Network