RNA id: TCONS_00033073


Basic Information

Item Value
RNA id TCONS_00033073
length 594
RNA type processed_transcript
GC content 0.43
exon number 3
gene id XLOC_016919
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51737097 ~ 51757328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaacaaacaaacattaaacatgtcgtgttgtgcggtaggatgccggaACCGATTGTCCCATAACAAAAAACTGAAATTTTACCGTATACCATCTGCCCACACTGCTTTCAATGctaaccgcagacgtctttggctagcAGCCATCAAAAGAGTCGACTGGAGTGAggagaaaattaaaaatgctcgactctgcagtgcacatttcatatcaggAGAGGCATCCTTGGACTATGATAGTCCTGACTTTGCCCCTTCAGTGTTCTCTCATACAACCCAGCGTGAATTAAACAAAGGCAATGCAAAGCTTGAGAGATTTAAGAGGAAAAGGAAACGGGATGAAAACACGTGCAGACCACCTGGTTTACAGCCTTCCAAAGGAATGAATAATGAAGTTGCAGCAGGAACCTCAGGAGCTCGCCTGTCTACAGATGCCTGCAGAATAGAGTCAGGTATTGGTCTTTGCACTGGTGAGAACTTCTAATCTCCCAACTAAACAgcgatacatttacatttttggattaTTTGACGAGGATCAGTTTCCAAGAGGCTATGAAGCAAGAAAGAAATCTTTTCAGCACTGATGACAAATGTAAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2657 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to act upstream of or within negative regulation of activation of membrane attack complex.

Ensembl:

ensembl_id ENSDART00000161111

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033965 lncRNA downstream 261931 51483547 ~ 51484324 (-) True XLOC_016909
TCONS_00033417 lncRNA downstream 269200 51473916 ~ 51477055 (-) True XLOC_016907
TCONS_00033964 lncRNA downstream 270837 51473913 ~ 51475418 (-) False XLOC_016907
TCONS_00033963 lncRNA downstream 336307 51409231 ~ 51409948 (-) True XLOC_016901
TCONS_00033416 lncRNA downstream 339129 51405600 ~ 51407126 (-) True XLOC_016900
TCONS_00033077 lncRNA upstream 3167 51752508 ~ 51757110 (-) False XLOC_016919
TCONS_00033966 lncRNA upstream 351649 52100990 ~ 52102594 (-) False XLOC_016925
TCONS_00033967 lncRNA upstream 351649 52100990 ~ 52103610 (-) True XLOC_016925
TCONS_00033418 lncRNA upstream 452778 52202119 ~ 52204072 (-) True XLOC_016926
TCONS_00033968 lncRNA upstream 716194 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033070 mRNA downstream 4544 51738261 ~ 51741711 (-) False XLOC_016919
TCONS_00033067 mRNA downstream 26816 51669228 ~ 51719439 (-) True XLOC_016918
TCONS_00033066 mRNA downstream 45546 51665527 ~ 51700709 (-) False XLOC_016918
TCONS_00033065 mRNA downstream 102211 51640591 ~ 51644044 (-) True XLOC_016917
TCONS_00033064 mRNA downstream 111824 51614252 ~ 51634431 (-) True XLOC_016916
TCONS_00033074 mRNA upstream 1420 51750761 ~ 51757328 (-) False XLOC_016919
TCONS_00033078 mRNA upstream 15838 51765179 ~ 51772438 (-) True XLOC_016920
TCONS_00033079 mRNA upstream 24721 51774062 ~ 51777238 (-) True XLOC_016921
TCONS_00033080 mRNA upstream 41153 51790494 ~ 51794472 (-) True XLOC_016922
TCONS_00033082 mRNA upstream 138692 51888033 ~ 52020049 (-) False XLOC_016924
TCONS_00033068 other downstream 4542 51737097 ~ 51741713 (-) False XLOC_016919
TCONS_00033052 other downstream 288027 51458113 ~ 51458228 (-) True XLOC_016905
TCONS_00033050 other downstream 316765 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033049 other downstream 330444 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033026 other downstream 1036773 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033075 other upstream 2734 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033076 other upstream 3167 51752508 ~ 51757110 (-) True XLOC_016919
TCONS_00033081 other upstream 100816 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033102 other upstream 2977965 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 3555748 55305089 ~ 55314210 (-) False XLOC_016954

Expression Profile

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