Fish Transcriptome and Expression Database

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model fish

XLOC_016923 (BX908782.1)

Basic Information

Item	Value
gene id	XLOC_016923
gene name	BX908782.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	51850157 ~ 51850271 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033081
TCTGGCAGCTAGCTCTGCAACTGTCACATGGTCGcctccactgaagctaagcagggctgcgcccggtcagtacctggatgggagaccacatgggaaagctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000087612

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00033081	True	115	rRNA	0.59	1	51850157	51850271

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_016922	ly97.3	coding	downstream	55685	51790494 ~ 51794472 (-)
XLOC_016921	ly97.2	coding	downstream	72919	51774062 ~ 51777238 (-)
XLOC_016920	BX908782.2	coding	downstream	77719	51765179 ~ 51772438 (-)
XLOC_016919	si:ch211-9d9.1	coding	downstream	92829	51737097 ~ 51757328 (-)
XLOC_016918	tgm1l1	coding	downstream	130718	51665527 ~ 51719439 (-)
XLOC_016924	scn12aa	coding	upstream	37762	51888033 ~ 52020049 (-)
XLOC_016925	NA	coding	upstream	250719	52100990 ~ 52103610 (-)
XLOC_016926	NA	coding	upstream	351848	52202119 ~ 52204072 (-)
XLOC_016927	tle2c	coding	upstream	481751	52332022 ~ 52365251 (-)
XLOC_016928	chico	coding	upstream	556294	52406565 ~ 52455525 (-)
XLOC_016909	NA	non-coding	downstream	365833	51483547 ~ 51484324 (-)
XLOC_016907	NA	non-coding	downstream	373102	51473913 ~ 51477055 (-)
XLOC_016905	BX677667.3	non-coding	downstream	391929	51458113 ~ 51458228 (-)
XLOC_016903	BX677667.1	non-coding	downstream	420667	51429173 ~ 51429490 (-)
XLOC_016902	BX677667.2	non-coding	downstream	434346	51415503 ~ 51415811 (-)
XLOC_016929	NA	non-coding	upstream	615264	52465535 ~ 52468939 (-)
XLOC_016931	NA	non-coding	upstream	777981	52628252 ~ 52681788 (-)
XLOC_016934	NA	non-coding	upstream	1077425	52927696 ~ 52929721 (-)

Expression

Co-expression Network