XLOC_016920 (BX908782.2)


Basic Information

Item Value
gene id XLOC_016920
gene name BX908782.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51765179 ~ 51772438 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033078
GACTTCAGATCTGCTTCACAGTCAAGAATGATGAAGGTTCTGCTGCTGGCTCTTGTTCTCGCACTGGTGTTTGCGAATGGCTCCTCCTTGATATGTAACAGATGTGTCCCCTCCAGACCTGGAGGAAGTTGTGTGACCACTAAAGAAACCTGTGGCTATAAACAAGACACGTGTGTATCTGCCAGGTTCACCATACAACCCTATTCCTACTTCCGAAGGTGCATCAGCATGGCAGACTGCATAATTCTTCAGTCCAGTCCCCATATATCGGCCAGATGCTGTCAGACGGACCGCTGCAATTAAACAATCCATCATCTAAACACAGAACTTACAGGAAAATACAAACTGGTGGCATTTAAAAAGTGCATATATCAAATCATTAATCTGTAGAATTATGTAGTAACACAACTATAGATTGTTTAATTACAGGATGTTGTAAAGCATTTAAATTAGAACTTGGGTGATTGTATGGGCACATGACTGTATGATTGAATGTTAATACAATTtcaatttttcaaaaatgttcaaaaatgcatgaataaaatgttgaatt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101479

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033078 True 553 mRNA 0.39 4 51765179 51772438

Neighbor

gene id symbol gene type direction distance location
XLOC_016919 si:ch211-9d9.1 coding downstream 7851 51737097 ~ 51757328 (-)
XLOC_016918 tgm1l1 coding downstream 45740 51665527 ~ 51719439 (-)
XLOC_016917 dad1 coding downstream 121135 51640591 ~ 51644044 (-)
XLOC_016916 pigr coding downstream 130748 51613453 ~ 51634431 (-)
XLOC_016915 si:ch211-9d9.8 coding downstream 153835 51610584 ~ 51611344 (-)
XLOC_016921 ly97.2 coding upstream 1624 51774062 ~ 51777238 (-)
XLOC_016922 ly97.3 coding upstream 18056 51790494 ~ 51794472 (-)
XLOC_016923 BX908782.1 coding upstream 77719 51850157 ~ 51850271 (-)
XLOC_016924 scn12aa coding upstream 115595 51888033 ~ 52020049 (-)
XLOC_016925 NA coding upstream 328552 52100990 ~ 52103610 (-)
XLOC_016909 NA non-coding downstream 280855 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 288124 51473913 ~ 51477055 (-)
XLOC_016905 BX677667.3 non-coding downstream 306951 51458113 ~ 51458228 (-)
XLOC_016903 BX677667.1 non-coding downstream 335689 51429173 ~ 51429490 (-)
XLOC_016902 BX677667.2 non-coding downstream 349368 51415503 ~ 51415811 (-)
XLOC_016926 NA non-coding upstream 429681 52202119 ~ 52204072 (-)
XLOC_016929 NA non-coding upstream 693097 52465535 ~ 52468939 (-)
XLOC_016931 NA non-coding upstream 855814 52628252 ~ 52681788 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G287508 NA misc CI01000073 null 81028 ~ 82285 (-)
striped catfish (Pangasianodon hypophthalmus) G275058 NA non-coding NC_047612.1 CM018558.1 389000 ~ 412259 (+)