XLOC_016916 (pigr)


Basic Information

Item Value
gene id XLOC_016916
gene name pigr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51613453 ~ 51634431 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033063
GCGGCCGCATGAGGGAGTTCTGCTCCAGTTTGGCCCGCACAGATGATCCTGAATCTGCCCCGAATGGGAACAGGAAGGTGACGATCGCCGATGACCCGACTCAGCATGTGTTTACTGTGAACATGCGCAACCTGACGGAGGACGATTCGGGCTGGTACTGGTGCGGTGTGGAGCTTGGTGGGATGTGGGTGTCAGACAGCACCGCCTCGCTTTATATCAGCGTCGTTCAAGGTATGTCAGTGGTGAACGGTATGGTGAGCGCAGAAGAAGGCAAAAGCGTCAGTGTTCAGTGTCTCTATAGTAAAAACCTCAGGTGGAGTGAGAAGCGGTGGTGTCGCAGTGGAAACTGGAACTCCTGCCTGCTGACGGACTCTGAAGGCACATTCAGCGGTAAAAATGTCCACATCCATGATGATAAGAACAGCGTGTTCACAGTGACCTTACAGCGGCTGGAGATGAGAGACTCGGGCTGGTACTGGTGCGGAGCCGGTCAACAAAACGTGGCTGTTCATGTGTCCGTCACTAGACGATCCCCAACACCAGTGTCCACAGCATCTCCAGTCCATAATAAGACAGCGGGGAATCTATCTGTAACAAGCTCAAATGAATCTTACAGTCGTCCAGTTTGGGAGTCTCCTCTTGTGATGTGTGGAGTCGTTCTGCTGGTCATGACTGCATGTCTGGCGCTTTGGAAGTTGCAGCAACAGTGCAATTTGTCCGTGGAGAGAAGGAGACTGTAAGAACGCCTCAGTGATTTTCTTGAACACTCCGGCTCAGCAGGTCCAGATGCTCTAACAGAGGACTGAAAACAACGAACTCAAGGACACTGTGATGATGAAGGAAACTGATGGACACTTTCATTTTTAAAGTCTCATTAAGAAATCTTTTAGCGGCCTGAAGACTGGAGAAACTGGAGGTTGGGGTATACTTTCAgaattaaaggtacaaaatctgtcactgggctggtaccttttcaaaacatACACTTGTATACTATTATAAGTTGACATTTGTATCTTTAGGTTACatttaaggtttacttttgtaTGTTTAAGTTACAATGAGGTACACATTTGCACTTTTTAGGAATTAATATatctttaaaggggacctattatgcccctttttacaagataagtctctgatgtccctaaggtgtctgtaaagttttagtttaaaataccatacatataaataatggtttataactcttttttttataaCTGCCCCTTTTAAGCTTTGAtcttaattgtgccattttgttgATTGTtgcctttaaattcaaataaaattgtactctttttcaaaagagggtggagctacagatgcatgtgtcagcatagtggcagattctaaAAGATGACTAACTTCCTATGCTAATAAGAAAGTGATCAttactaatgggtggggctttcccttctctgatgacacgtacataGGATGATACATAAAAATACCCCCCTTTTGTCCCACTGCAGCAGTTCTGCCAGTGTGAAATGACAACTAGAGAGGGAAACATTGCTACTACCTAGAAATCTAATATAGGAATGCTTTCGTGTCAAATATACTGGATGTaatgtacagtaaataataaatgtatacttgtaaatgaa
>TCONS_00033064
GACCTCAACAATGAGTCTTCCGCTGCTTCTGACCGCTCTTGTTCTTGGTGGACTGCCAGGGTCCCACAGCACAGTGACTACAATCGGAGATGTAGCTGTACTGGAGGGTGGATCCGTCACTGTCCCATGCCACTATAACCCGCAGTACATCAGCAATGTGAAGTACTGGTGCAGCGGCCGCATGAGGGAGTTCTGCTCCAGTTTGGCCCGCACAGATGATCCTGAATCTGCCCCGAATGGGAACAGGAAGGTGACGATCGCCGATGACCCGACTCAGCATGTGTTTACTGTGAACATGCGCAACCTGACGGAGGACGATTCGGGCTGGTACTGGTGCGGTGTGGAGCTTGGTGGGATGTGGGTGTCAGACAGCACCGCCTCGCTTTATATCAGCGTCGTTCAAGGTATGTCAGTGGTGAACGGTATGGTGAGCGCAGAAGAAGGCAAAAGCGTCAGTGTTCAGTGTCTCTATAGTAAAAACCTCAGGTGGAGTGAGAAGCGGTGGTGTCGCAGTGGAAACTGGAACTCCTGCCTGCTGACGGACTCTGAAGGCACATTCAGCGGTAAAAATGTCCACATCCATGATGATAAGAACAGCGTGTTCACAGTGACCTTACAGCGGCTGGAGATGAGAGACTCGGGCTGGTACTGGTGCGGAGCCGGTCAACAAAACGTGGCTGTTCATGTGTCCGTCACTAGACGATCCCCAACACCAGTGTCCACAGCATCTCCAGTCCATAATAAGACAGCGGGGAATCTATCTGTAACAAGCTCAAATGAATCTTACAGTCGTCCAGTTTGGGAGTCTCCTCTTGTGATGTGTGGAGTCGTTCTGCTGGTCATGACTGCATGTCTGGCGCTTTGGAAGTTGCAGCAACAGTGCAAGAAAAAGCACAAACCTCGAGAGACGAGTGAAATGAGCGATAATCTTAAAATTTGTCCGTGGAGAGAAGGAGACTGTAAGAACGCCTCAGTGATTTTCTTGAACACTCCGGCTCAGCAGGTCCAGATGCTCTAACAGAGGACTGAAAACAACG

Function

symbol description
pigr Predicted to enable transmembrane signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-060503-327 Predicted to enable transmembrane signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000101890

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033063 False 1613 mRNA 0.43 6 51613453 51630555
TCONS_00033064 True 1037 mRNA 0.52 8 51614252 51634431

Neighbor

gene id symbol gene type direction distance location
XLOC_016915 si:ch211-9d9.8 coding downstream 2109 51610584 ~ 51611344 (-)
XLOC_016914 si:ch211-9d9.7 coding downstream 19618 51592392 ~ 51593835 (-)
XLOC_016913 LO018493.1 coding downstream 92374 51520262 ~ 51521079 (-)
XLOC_016912 pigrl2.3 coding downstream 101159 51509663 ~ 51512294 (-)
XLOC_016910 pigrl2.3 coding downstream 105913 51493515 ~ 51507540 (-)
XLOC_016917 dad1 coding upstream 6160 51640591 ~ 51644044 (-)
XLOC_016918 tgm1l1 coding upstream 31096 51665527 ~ 51719439 (-)
XLOC_016919 si:ch211-9d9.1 coding upstream 102666 51737097 ~ 51757328 (-)
XLOC_016920 BX908782.2 coding upstream 130748 51765179 ~ 51772438 (-)
XLOC_016921 ly97.2 coding upstream 139631 51774062 ~ 51777238 (-)
XLOC_016909 NA non-coding downstream 129129 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 136398 51473913 ~ 51477055 (-)
XLOC_016905 BX677667.3 non-coding downstream 155225 51458113 ~ 51458228 (-)
XLOC_016903 BX677667.1 non-coding downstream 183963 51429173 ~ 51429490 (-)
XLOC_016902 BX677667.2 non-coding downstream 197642 51415503 ~ 51415811 (-)
XLOC_016923 BX908782.1 non-coding upstream 215726 51850157 ~ 51850271 (-)
XLOC_016925 NA non-coding upstream 466559 52100990 ~ 52103610 (-)
XLOC_016926 NA non-coding upstream 567688 52202119 ~ 52204072 (-)
XLOC_016929 NA non-coding upstream 831104 52465535 ~ 52468939 (-)
XLOC_016931 NA non-coding upstream 993821 52628252 ~ 52681788 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000073_00020844_00031563 NA coding CI01000073 null 20731 ~ 31563 (-)