XLOC_016918 (tgm1l1)


Basic Information

Item Value
gene id XLOC_016918
gene name tgm1l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51665527 ~ 51719439 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033066
GATGCCAGGAGAAAGACAGTCAATTCGAGATAACTCTGCTGTCGGCCGATTCCACGGCGTTTCAGCAAGGAATGGAGAAGCCGTCGCGGAGAAACCCAGCGAGAGTAAAACGAAGAAACCGGAGAGCGGCTGCAGGCGCTGGCTACGAAAGGCTTGTCCATGCTGCTTACGCCGACAGAGCAACTCTTATGATTTAACCAGTGAAGCGGATGGTGTGGTTGCTGGAAATGAAGAAATCGAACAGCCGGCGTCTCCAGTGTCTGTCAGTGTAGAAACCAATGTGGACGATTTGTCTCTAGTGGTGCGATCTGTGGATCTGCTCAGCCGGAAAACTGACCGTAATAAGAAGGAGCATCACACGGATCAGTACAGTGGAGATCAGCTGATCATCCGCAGAGGACAGACTTTCCAGATTGAGCTGGAGCTCTCACGACCCTTCAACCCAAACACCGATAAACTACACCTGGAGCTGAAGACAGGAGCGCTCCCACTGGTGTCCAAAGGGACGCACATCATCATCCCACTGGTGGAGGAGCTACAGGATGAACGCTGGGAGGCCAAGATTGTGGAGCAGAACCTCAACCGGGCCAAGCTGTCCATCAACTCATCCGTCAATGCTGTTATAGGAAAATACACGCTGACTGTCGTAACCCAGTGTCTAAAGACGAACGAATCTACCACACACGATCCTGAAAAAGACATTTACATGCTCTTCAATCCCTGGTGTGAAGATGATGCTGTGTTcatggagggagagagagagctgaatgAGTACGTCCTCAATGACACCGGCAGGATCTACTACGGCACAGAGAAGCAGATCGGAGCTCGGACATGGAACTTCGGTCAGTTTGATGAAGGGATTCTGGAGGCCTGTCTGTTTGTGCTGGATAACAGTGAAGTTCCTCCATCAGGAAGAGGAGATCCGGTTAATGTTGTCCGGGTCATTTCTGCCATGATCAACTCTCCGGATGACCGTGGTGTTCTGGAGGGAAACTGGTCTGGGAATTACACTGGAGGAACGTCTCCCACCGCATGGAGTGGAAGTGTTGAAATTCTCAAGCAATACCACAGAGAAGGAGGAACGCCGGTCAAATACGGACAGTGCTGGGTGTTCTCTGGAGTCACAACcacagTGTTGAGATGTCTTGGTATTCCTGCCCGGTCCGTAACAAACTTCCAGTCTGCCCACGATACGGATGTGTCCTTGACCACAGATGTGTATTTTGATGAGGATATGGAGCCGATCCATCATCTCAACTCTGACTCCGTATGGAACTTCCATGTGTGGAATGACTGCTGGTTGGCACGTCCGGATCTGCCTCCTGGTTTTGGCGGGTGGCAGGCGGTGGACTCCACACCTCAGGAGACCAGTCATGGGACGTTTCGCTGCGGTCCGGCGTCTCTGGCTGCGGTTCGCTCTGGACAGGTCTATCTCAAATACGACGTGCCGTTCGTCTTCGCTGAGGTGAACAGTGACAAGATCTACTGGCAGAGAAACCTGGACGGCACCTTCAGTCAGATCCACAGTGAGAAGAAGGCTGTGGGTCACTGCATCAGCACTAAAGCTGTGGGCTCCGATGAACGAGTCGACATCACAGACGTCTACAAATACCCTGAagGCTCAGAGGAGGAGCGTATCGCGGTGGAAACGGCCTGTCGGTATGGCAGTAAGCCGGATGTGTACTCGAGCGCCATGGCGGAGGACGTGCAGGTGGAGGTGCGGATGGAGGGAGAAGGTCCTCGTATGGGTGGAGATGCTCAGTTGAAGATTGTGGTGAAGAACATGAGCTCTCAGCCACGCAGAACCACCCTTCACAGCCAGGCGGCAGTCATGTACTACACCGGCGTGCTGAAGGACACCGTGAAGAAGGACAAGCTCAGTGTGGAGCTCATGCCACAGGAAGAAAAGGTCATCGAGTGGACCCTGCCTTACACACAGTACCAGAATCAGCTGGTGGATCAGGCTGCGCTCATGCTGACTCTGTCTGGAAGGGTCAGTGAGACCCAGCAGGTTCTGGCCAACCAGACATCCTTTAGGCTCCGCACACCTGACCTCCAGATTGAGCCCATCGGAGAGGCGTATGTGGGTAAAGAGGCGTCTGCCAAGATCAGCTTCACCAATCCTCTGCCCTGCACTCTGCGTAATGTGGTTGTCCGAGTGGAAGGACTGGGGCTCCGAGACCTGCATCCCATCAAAGTCGGTGATGTGGGCAAGCATGGTAAAGTAATGGTGACGGAGCACTTCATCCCATCTATAGCTGGCGAGAGGAAGCTGGTGGCGTCACTGGACTGTAAACAGCTGACGCAGGTTCACGGTGTGGCCGATATCATCGTTCACGAAAGCCAGTGATTTCACACTCTCTAGCTTCACAGCATTAATTCAGTATTCAGAACTGCATTAACCATGTTTACACTGAGCTACCAGGTCATTTCTTTAAAAGCTCGTCATCTTTAAAGGAGGGACCCTCCCTTTCGCATAGTTTTATTGGAAATGTCCCACTTTTCCCAATTGTTCCTACTGTATTTCTCTAATTTTACAGATCACCTATTTacagattatttatttagctttgctTTACTGTTTGTATTAcctgcttttgaaaaaaaaaaaaacatttagaggtATTAtctacattcaccggccactttattaggttcaccatgctagtaccgagttggacccctttttgtgttcaactgccttaatccttcatggcatagattcaataaggtactggaaatattcctcagaggttttgctccatattgacatgagagcatcacgcagctgcagatttgtcggctgcaggTCCATAATGCTactctcccgttccaccacatcccaaaggtgctctattggattgatctctggtgactgtggaggccatttgactacagtgaactcattgtcatgttcaggaaaccagtctgagatgattcgagctttttgacatggtgcgttatcctgctggaagtagccatcagaagatgggcacactgtggtcataaagggatggacatggtcaacaacaatactcaggtaggctgtgacgttgacacGATACTCAATTtctactaatgggtccaaagtgtgccattAAACCACCCCCACCAGCCTAAtccgttaatacaaggcaggatggatccatggtttcatgttgttgatgccaaattctgatcctaccctCTGAATGTcatagcagaaatcgagacttatcagatcaggcaacgtttttccagtcttctattgtccagtgaGCGTGTATGTATTGaggcctcagtttcctgttcttagctgacaggagtggcacccggtgtggtcttctgctgctgtagcccatccacttcaaggttggatgtgttgtgttcagagatgctcttctgctgaCCTCGGTTTTagtgagtggttatttgagttactgttgcctttttatcagctggaaccagtctggaaTCAActaggcatttgcgcccacagaactgccgcttactggatattttctcttgttcagaccattctctgtaaaccctggagatggtagtgcgtgaaaatcccagtagatcagcagtttctgaaatactcagaccagcccggcTGGcttcaacaaccatgccacgttcgaagtcccttaaatcacctttctttcccattctgatgcttggtttgaactgtagcagatcgtcttggccatgtcttcatgcctaaatgcattgagttgctgccatctgataggctgattagaagtttgcattaacaaacagttggacaggtgtgcctaataaagtggccggtgtgtgtataaGTATTAAGTATTATAACTTCatgaatgttatatatatatatatatgtagccaATGCATCTAATATCTTAGCTGCCTTATATGTGTAATGTTCACAAGCGTGTGATGAACTAAAATAATGTGACTGATTTAATATTGAGTTTTATTGACCTGATACGCCGTTGTATCTTCACTTGTATTTGCTACTACGTATACTGTACATGAATATTATTGTTGTGCACTAAACTatgaaaacatacagtatgaagaTAATTAATAGTAGTTTTAGGATTTTATGAAGGAtatcaaatattttatgtttgtataatttatgtttgtattttattttggtttttaaagtgacattttattaTCAACCTATTTTGGTCtctgtattagtttttttttaatgtttcttttgcCTACTTGAGCAAGataagacgtgtgtgtgtgtgtgtgtgtgtgtttgatttggaaAGATGAAGTAAAACACTCCCTTCTGTTTGCATTTGAACAACTGGTATCTTTCTTGAGAACCAAACATCTTAGCTTATTAGGTGTGTTCAATGCAAACTGCATTGGCATGAGATACTTTACTCATGggtaatattgtgaaatgttgagtttatttgtttattaatagaaCAAGGGGCTGTTGAATGagtgattctgattggttgatgaacATTCTGGAGTGCATTAGTTCCTGTAcagttttttgagaaattgtttttTGCAGTGATTTTGGTTTCTATAAGCCAGAGATGCTCAAAgtagggcccgtgggccaaagttggcccatggctACGTCCACTCGGTATCTGCGCGCACAAAATTCCactgatttttagcccatcattaattctgtttatttacttgagtaaatgtgtgtaaatctatatttatccagttttttaattcagtaatattattgactattgtgaaaatgttcatcgGATTTattcttttactagatatattataaagtgaatctatttggatttgcattttaaacattaaatagaagttaaaaaatatgttttttatttcatattttaaggttttagttatgatactcccaaaataattctgcagaaatccgcagacctttaccaaaattctcagcagaaataggaaaaaatttccgcagattctgtctggctctaccCATGGCCCACTAttccatctgaaaagagagggagaatgattgAGAGGGTTGGAGCGAACGCTtttgacagagatcgtcatttccaatttaatcttttgtttctttgttttattgctgagctacaaaaaaagcctatcaattaaatgttgtaaatgaattaattttaaactgtaaatgttATCACTAGACAGATAGAATAAATGCACAAGTCATCTGCTAGCAAATCAAGGCGAAGACAGGAGCAACTCCATTAATGTATTCAGCAATGAACTCTGTTCTGTTACTAATGGaattgtttgtgtttgtactgtaataagttaatatgatttaaagcaacatcttctaattttattttaaaaatattaccaAACAAATTAGGAAATCCCCTTTGCAAATTTATTGTAATATGGTTTGGTATATAGTCAGCCCCCAGCTCTCAATCAAGTTAGATTTTTGGCCCTTTTTAAGaagaagtttgggcacccctgctataaCTATAACTAGTTTAAACAGTTATGAAAAtaaccaaaacttttttttttttttgaaacaaaAGAAGTATATGCAAAAACAAAGCTACAGACTTACTGTAAGAACAACAATCCTACAAATCAATGTGAATGatgcaatcaaataaaaaatgacataGAAATACACAACTATTTAAAGTAGGGAGATGCAACACACATCttttatattgaccttattctttaatgCAGAAGTGCccttgtttttgtgattttttttttagtacaggggtgcccaaactcggtcctggagggccggtgtcctgcaaagtttagttccaaccccaatcagacacacctgggctagctaatcaagctcttattaggccagaggtgtccaaactcatacctggagggccggtgtcctgcaaagtttagttcctacctcaattagacacacctaaaccagctaatcaagctcttactagatatactagaaacgtccaggcaggtgtgttgaaggaagttggaactaaactctgcagggcaccggccctccaggacagagtttggacatccctgttctaggctttctagaaacatccatgcaggtgctgaggcaagttggagctaaaatctgctggacactgaccctccaggaccgattcATTGGGAGAAAAGACTGAAATAacacggtcaaactacttgctctacaagcaagtgtgttcatgactatacagaagcagaataatataagaaaatatcagtttgcaacatcaaaaagCATAACCGACTTGTTTtcatgtctaaaaatgaatggaagtgaataagaccgGTAGTCTAGAGCCAAAAAGATTCACAACgattaaggt
>TCONS_00033067
TGTTGGTTTGACTCTTGAGGCTGTTGGAGGTTTTGCGTGCTGTACTTCTATACATATAACATTTGAAGAACATTTTGGATTCCTGCGTTTACTAAAGATGCCAGGAGAAAGACAGTCAATTCGAGATAACTCTGCTGTCGGCCGATTCCACGGCGTTTCAGCAAGGAATGGAGAAGCCGTCGCGGAGAAACCCAGCGAGAGTAAAACGAAGAAACCGGAGAGCGGCTGCAGGCGCTGGCTACGAAAGGCTTGTCCATGCTGCTTACGCCGACAGAGCAACTCTTATGATTTAACCAGTGAAGCGGATGGTGTGGTTGCTGGAAATGAAGAAATCGAACAGCCGGCGTCTCCAGTGTCTGTCAGTGTAGAAACCAATGTGGACGATTTGTCTCTAGTGGTGCGATCTGTGGATCTGCTCAGCCGGAAAACTGACCGTAATAAGAAGGAGCATCACACGGATCAGTACAGTGGAGATCAGCTGATCATCCGCAGAGGACAGACTTTCCAGATTGAGCTGGAGCTCTCACGACCCTTCAACCCAAACACCGATAAACTACACCTGGAGCTGAAGACAGGAGCGCTCCCACTGGTGTCCAAAGGGACGCACATCATCATCCCACTGGTGGAGGAGCTACAGGATGAACGCTGGGAGGCCAAGATTGTGGAGCAGAACCTCAACCGGGCCAAGCTGTCCATCAACTCATCCGTCAATGCTGTTATAGGAAAATACACGCTGACTGTCGTAACCCAGTGTCTAAAGACGAACGAATCTACCACACACGATCCTGAAAAAGACATTTACATGCTCTTCAATCCCTGGTGTGAAGATGATGCTGTGTTcatggagggagagagagagctgaatgAGTACGTCCTCAATGACACCGGCAGGATCTACTACGGCACAGAGAAGCAGATCGGAGCTCGGACATGGAACTTCGGTCAGTTTGATGAAGGGATTCTGGAGGCCTGTCTGTTTGTGCTGGATAACAGTGAAGTTCCTCCATCAGGAAGAGGAGATCCGGTTAATGTTGTCCGGGTCATTTCTGCCATGATCAACTCTCCGGATGACCGTGGTGTTCTGGAGGGAAACTGGTCTGGGAATTACACTGGAGGAACGTCTCCCACCGCATGGAGTGGAAGTGTTGAAATTCTCAAGCAATACCACAGAGAAGGAGGAACGCCGGTCAAATACGGACAGTGCTGGGTGTTCTCTGGAGTCACAACcacagTGTTGAGATGTCTTGGTATTCCTGCCCGGTCCGTAACAAACTTCCAGTCTGCCCACGATACGGATGTGTCCTTGACCACAGATGTGTATTTTGATGAGGATATGGAGCCGATCCATCATCTCAACTCTGACTCCGTATGGAACTTCCATGTGTGGAATGACTGCTGGTTGGCACGTCCGGATCTGCCTCCTGGTTTTGGCGGGTGGCAGGCGGTGGACTCCACACCTCAGGAGACCAGTCATGGGACGTTTCGCTGCGGTCCGGCGTCTCTGGCTGCGGTTCGCTCTGGACAGGTCTATCTCAAATACGACGTGCCGTTCGTCTTCGCTGAGGTGAACAGTGACAAGATCTACTGGCAGAGAAACCTGGACGGCACCTTCAGTCAGATCCACAGTGAGAAGAAGGCTGTGGGTCACTGCATCAGCACTAAAGCTGTGGGCTCCGATGAACGAGTCGACATCACAGACGTCTACAAATACCCTGAagGCTCAGAGGAGGAGCGTATCGCGGTGGAAACGGCCTGTCGGTATGGCAGTAAGCCGGATGTGTACTCGAGCGCCATGGCGGAGGACGTGCAGGTGGAGGTGCGGATGGAGGGAGAAGGTCCTCGTATGGGTGGAGATGCTCAGTTGAAGATTGTGGTGAAGAACATGAGCTCTCAGCCACGCAGAACCACCCTTCACAGCCAGGCGGCAGTCATGTACTACACCGGCGTGCTGAAGGACACCGTGAAGAAGGACAAGCTCAGTGTGGAGCTCATGCCACAGGAAGAAAAGGTCATCGAGTGGACCCTGCCTTACACACAGTACCAGAATCAGCTGGTGGATCAGGCTGCGCTCATGCTGACTCTGTCTGGAAGGGTCAGTGAGACCCAGCAGGTTCTGGCCAACCAGACATCCTTTAGGCTCCGCACACCTGACCTCCAGATTGAGCCCATCGGAGAGGCGTATGTGGGTAAAGAGGCGTCTGCCAAGATCAGCTTCACCAATCCTCTGCCCTGCACTCTGCGTAATGTGGTTGTCCGAGTGGAAGGACTGGGGCTCCGAGACCTGCATCCCATCAAAGTCGGTGATGTGGGCAAGCATGGTAAAGTAATGGTGACGGAGCACTTCATCCCATCTATAGCTGGCGAGAGGAAGCTGGTGGCGTCACTGGACTGTAAACAGCTGACGCAGGTTCACGGTGTGGCCGATATCATCGTTCACGAAAGCCAGTGATTTCACACTCTCTAGCTTCACAGCATTAATTCAGTATTCAGAACTGCATTAACCATGTTTACACTGAGCTACCAGGTCATTTCTTTAAAAGCTCGTCATCTTTAAAGGAGGGACCCTCCCTTTCGCATAGTTTTATTGGAAATGTCCCACTTTTCCCAATTGTTCCTACTGTATTTCTCTAATTTTACAGATCACCTATTTacagattatttatttagctttgctTTACTGTTTGT

Function

symbol description
tgm1l1 Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to be involved in peptide cross-linking. Is expressed in muscle and notochord.

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-139 Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to be involved in peptide cross-linking. Is expressed in muscle and notochord.

Ensembl:

ensembl_id ENSDARG00000102106

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033066 False 6290 mRNA 0.44 13 51665527 51700709
TCONS_00033067 True 2685 mRNA 0.51 14 51669228 51719439

Neighbor

gene id symbol gene type direction distance location
XLOC_016917 dad1 coding downstream 21483 51640591 ~ 51644044 (-)
XLOC_016916 pigr coding downstream 31096 51613453 ~ 51634431 (-)
XLOC_016915 si:ch211-9d9.8 coding downstream 54183 51610584 ~ 51611344 (-)
XLOC_016914 si:ch211-9d9.7 coding downstream 71692 51592392 ~ 51593835 (-)
XLOC_016913 LO018493.1 coding downstream 144448 51520262 ~ 51521079 (-)
XLOC_016919 si:ch211-9d9.1 coding upstream 17658 51737097 ~ 51757328 (-)
XLOC_016920 BX908782.2 coding upstream 45740 51765179 ~ 51772438 (-)
XLOC_016921 ly97.2 coding upstream 54623 51774062 ~ 51777238 (-)
XLOC_016922 ly97.3 coding upstream 71055 51790494 ~ 51794472 (-)
XLOC_016923 BX908782.1 coding upstream 130718 51850157 ~ 51850271 (-)
XLOC_016909 NA non-coding downstream 181203 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 188472 51473913 ~ 51477055 (-)
XLOC_016905 BX677667.3 non-coding downstream 207299 51458113 ~ 51458228 (-)
XLOC_016903 BX677667.1 non-coding downstream 236037 51429173 ~ 51429490 (-)
XLOC_016902 BX677667.2 non-coding downstream 249716 51415503 ~ 51415811 (-)
XLOC_016925 NA non-coding upstream 381551 52100990 ~ 52103610 (-)
XLOC_016926 NA non-coding upstream 482680 52202119 ~ 52204072 (-)
XLOC_016929 NA non-coding upstream 746096 52465535 ~ 52468939 (-)
XLOC_016931 NA non-coding upstream 908813 52628252 ~ 52681788 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location