XLOC_016922 (ly97.3)


Basic Information

Item Value
gene id XLOC_016922
gene name ly97.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51790494 ~ 51794472 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033080
ATGATGAAGTTTCTGATATTGGCTGTTGTTCTTATGCTGGCTGTGACCGGCGgcaCGGCTCTGGACTGCATTCGCTGTGTCCCAAAGAAAGCCGGAGGTGCCTGTGAGGTCACTTCTGAAACATGCCCGCCGGAGAAAAGCGCCTGTGctgctgccaaattcagcagAAGCCCGTATGGTCACTTCCAGAAGTGCATGGCCATGTCGGACTGTGAGATGCAGAAGCGCAACTCTTACATCAACATCAAGTGCTGCCAGAAGGACTTCTGCAACACCTTCGACTGA

Function

symbol description
ly97.3 Enables lipopolysaccharide binding activity. Acts upstream of or within defense response to Gram-negative bacterium and response to lipopolysaccharide. Is expressed in several structures, including blastoderm; blastomere; digestive system; endoderm; and floor plate neural tube.

GO:

id name namespace
GO:0032496 response to lipopolysaccharide biological_process
GO:0050829 defense response to Gram-negative bacterium biological_process
GO:0001530 lipopolysaccharide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-170621-3 Enables lipopolysaccharide binding activity. Acts upstream of or within defense response to Gram-negative bacterium and response to lipopolysaccharide. Is expressed in several structures, including blastoderm; blastomere; digestive system; endoderm; and floor plate neural tube.

Ensembl:

ensembl_id ENSDARG00000116628

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033080 True 285 mRNA 0.53 3 51790494 51794472

Neighbor

gene id symbol gene type direction distance location
XLOC_016921 ly97.2 coding downstream 13256 51774062 ~ 51777238 (-)
XLOC_016920 BX908782.2 coding downstream 18056 51765179 ~ 51772438 (-)
XLOC_016919 si:ch211-9d9.1 coding downstream 33166 51737097 ~ 51757328 (-)
XLOC_016918 tgm1l1 coding downstream 71055 51665527 ~ 51719439 (-)
XLOC_016917 dad1 coding downstream 146450 51640591 ~ 51644044 (-)
XLOC_016923 BX908782.1 coding upstream 55685 51850157 ~ 51850271 (-)
XLOC_016924 scn12aa coding upstream 93561 51888033 ~ 52020049 (-)
XLOC_016925 NA coding upstream 306518 52100990 ~ 52103610 (-)
XLOC_016926 NA coding upstream 407647 52202119 ~ 52204072 (-)
XLOC_016927 tle2c coding upstream 537550 52332022 ~ 52365251 (-)
XLOC_016909 NA non-coding downstream 306170 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 313439 51473913 ~ 51477055 (-)
XLOC_016905 BX677667.3 non-coding downstream 332266 51458113 ~ 51458228 (-)
XLOC_016903 BX677667.1 non-coding downstream 361004 51429173 ~ 51429490 (-)
XLOC_016902 BX677667.2 non-coding downstream 374683 51415503 ~ 51415811 (-)
XLOC_016929 NA non-coding upstream 671063 52465535 ~ 52468939 (-)
XLOC_016931 NA non-coding upstream 833780 52628252 ~ 52681788 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000073_00102960_00104116 NA misc CI01000073 null 101378 ~ 104200 (-)