XLOC_016927 (tle2c)


Basic Information

Item Value
gene id XLOC_016927
gene name tle2c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52332022 ~ 52365251 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033084
ctttattggcatggcaaatacaaatatattGCTCCGCTGGTGTCAGGTCACGCCGGCATGAAATTCACCGTTCTGGAAACTCTGGATCACATAAAAGAGGAATTCCAGCTGTTCCAGGCTCAGTATCACAGTCTGAAGCTGGAATGCGAGAAGCTGGCGAGTGAGAAAACAGAGATGCACAGACATTATATCATGTATTATGAGATGTCTTACGGGCTGAACATCGAGATGCAGAAGCAGGCGGAGATTGTAAAGCGGCTCAGTGCTATATGCACTCAGATCATTCCACTGTTGTCTCAAGAGCATCAGCATCAGGTCGCTCAGGCAGTGGAAAGATCCAAACACGTCAGCATGGCTGAGCTCAACGCCATCATCGGGcagcagcagttcCAGCATCTGTCCCATCATGCGCCAGGTTTCCCCATGACACCGCACCCCTCAGGGCTGAGTCTGGGCGCCGGTGCAGGACTCATGGCTCTTCCCGGAGCCTTTCCTTTCCCTCCACACCTGATGCCTAAAGATGACCTCAGTCACCCCGAGGCCCTCGAATCCAGAGGTACAGACTCcggCAGTGGTTCACCGGTGGGTCATAGGTCAGTGGGTCTGCGTCTGGCTCTTCCCCctccttcctcctcctcttcctctcacTCTGATCTGGACAGTAAACGGAGCGGCTCAGACGCAGGACGAACACGGCGGGAAAGCGGCAATAAAAATGAAGACACTCTCAGAAGAGACGGCGCTAAAGAGaaaaGCTTGTCTCCTGCTGGAGTTTCTCCCAGGTCTACTGAAGGGAACGGGTTAAACAGTTCTCCGGTGCTGTGCAAAAATCCGTCAAGAGAAGGTTCATCCTCTCCTCCGTCTCAGCCTCGCTCACCTGCGCTCTGCAAGAGCCCAACCCAGGAGAAAGTGCGATCTCCGTCTCCATCAGCGTCTCATGAGTCTCTGTCTCCTGGCTCTCCAGCAGCTCCTCGTCCTCTGTCCTCCTCTGCCCGCGGCCCGTCTCCCGCTCTCAAACACTAG

Function

symbol description
tle2c Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE2 (TLE family member 2, transcriptional corepressor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0070491 repressing transcription factor binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-84 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE2 (TLE family member 2, transcriptional corepressor).

Ensembl:

ensembl_id ENSDARG00000067832

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033084 True 1023 mRNA 0.54 11 52332022 52365251

Neighbor

gene id symbol gene type direction distance location
XLOC_016926 NA coding downstream 127950 52202119 ~ 52204072 (-)
XLOC_016925 NA coding downstream 228412 52100990 ~ 52103610 (-)
XLOC_016924 scn12aa coding downstream 311973 51888033 ~ 52020049 (-)
XLOC_016923 BX908782.1 coding downstream 481751 51850157 ~ 51850271 (-)
XLOC_016922 ly97.3 coding downstream 537550 51790494 ~ 51794472 (-)
XLOC_016928 chico coding upstream 41314 52406565 ~ 52455525 (-)
XLOC_016929 NA coding upstream 100284 52465535 ~ 52468939 (-)
XLOC_016930 gna11b coding upstream 104603 52469854 ~ 52550135 (-)
XLOC_016931 NA coding upstream 263001 52628252 ~ 52681788 (-)
XLOC_016932 LO018490.1 coding upstream 416805 52782056 ~ 52795722 (-)
XLOC_016909 NA non-coding downstream 847698 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 854967 51473913 ~ 51477055 (-)
XLOC_016934 NA non-coding upstream 562445 52927696 ~ 52929721 (-)
XLOC_016944 NA non-coding upstream 1788199 54153450 ~ 54155169 (-)
XLOC_016947 FQ378001.1 non-coding upstream 2362055 54727306 ~ 54727426 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location