RNA id: TCONS_00033077


Basic Information

Item Value
RNA id TCONS_00033077
length 499
lncRNA type sense_over
GC content 0.41
exon number 4
gene id XLOC_016919
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51737097 ~ 51757328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATAATGAAGGTTCTGCTGCTGGCTCTTGTTCTCGCACTGGTGTTTGCCAACGtagacctgaaccaaaagtggggggtttcatagccctttaaggcTCTTCCTTGACATGTCACAGATGTATCCCTGACATACCTGGAGGAAACTGCGGGTTCACTGAAGAGACCTGTGTCAACGATCAAAATGCGTGTGTAGCTGTCGCCTACAAGAAATTTCCCTATTCCTACTTCCGGAGGTGCATCAACATGGAAGACTGCTCGGCTCTTGAGTCCAATCGCCATTTATATGCCAGATGCTGTCAGACGGATCTCTGCAATTAACCAACCCATCATCTAAACCCACAGAACACAAAGGAAAAGTGTGGCATTTAAGAGGTGCATATCACAGAATTAATCAGTAGTATTATGTGGTTGTATAGGCACATAATGATTATGTATATGGTGATCTCACTAATTCATTTAGTTTTCAAAATGcttcaaataaaaacaattattaaaaaat

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033069 lncRNA downstream 3149 51737097 ~ 51749359 (-) False XLOC_016919
TCONS_00033965 lncRNA downstream 268184 51483547 ~ 51484324 (-) True XLOC_016909
TCONS_00033417 lncRNA downstream 275453 51473916 ~ 51477055 (-) True XLOC_016907
TCONS_00033964 lncRNA downstream 277090 51473913 ~ 51475418 (-) False XLOC_016907
TCONS_00033963 lncRNA downstream 342560 51409231 ~ 51409948 (-) True XLOC_016901
TCONS_00033966 lncRNA upstream 343880 52100990 ~ 52102594 (-) False XLOC_016925
TCONS_00033967 lncRNA upstream 343880 52100990 ~ 52103610 (-) True XLOC_016925
TCONS_00033418 lncRNA upstream 445009 52202119 ~ 52204072 (-) True XLOC_016926
TCONS_00033968 lncRNA upstream 708425 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033969 lncRNA upstream 871142 52628252 ~ 52681748 (-) False XLOC_016931
TCONS_00033070 mRNA downstream 10797 51738261 ~ 51741711 (-) False XLOC_016919
TCONS_00033067 mRNA downstream 33069 51669228 ~ 51719439 (-) True XLOC_016918
TCONS_00033066 mRNA downstream 51799 51665527 ~ 51700709 (-) False XLOC_016918
TCONS_00033065 mRNA downstream 108464 51640591 ~ 51644044 (-) True XLOC_016917
TCONS_00033064 mRNA downstream 118077 51614252 ~ 51634431 (-) True XLOC_016916
TCONS_00033078 mRNA upstream 8069 51765179 ~ 51772438 (-) True XLOC_016920
TCONS_00033079 mRNA upstream 16952 51774062 ~ 51777238 (-) True XLOC_016921
TCONS_00033080 mRNA upstream 33384 51790494 ~ 51794472 (-) True XLOC_016922
TCONS_00033082 mRNA upstream 130923 51888033 ~ 52020049 (-) False XLOC_016924
TCONS_00033083 mRNA upstream 262673 52019783 ~ 52020049 (-) True XLOC_016924
TCONS_00033073 other downstream 3167 51746255 ~ 51749341 (-) False XLOC_016919
TCONS_00033071 other downstream 3573 51738686 ~ 51748935 (-) False XLOC_016919
TCONS_00033068 other downstream 10795 51737097 ~ 51741713 (-) False XLOC_016919
TCONS_00033052 other downstream 294280 51458113 ~ 51458228 (-) True XLOC_016905
TCONS_00033050 other downstream 323018 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033081 other upstream 93047 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033102 other upstream 2970196 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 3547979 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 4136628 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 4179264 55936374 ~ 56003795 (-) False XLOC_016960