RNA id: TCONS_00033968


Basic Information

Item Value
RNA id TCONS_00033968
length 3405
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id XLOC_016929
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52465535 ~ 52468939 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTGTACGCGTGGAGGATGAACGTGATTTTTAATCTAAAATGCACACGGTTATGATGAGCAATAGTCTGAGAGATTCTAGACTTCGGAAAAAAAGCATCAGAGAAGGAGCGCGCCTCCTCTATGGTGTGAATGTTATATgagataagaataaaaaaatcagatttttaagcaaaagattaattaaataaagaacgttttatttatataatttatggaCCAGATCTGAAGTTGTTGATAATTTGAATGCTATTGTTTCCTCTTCTGCTATATGAAGCACTCCCATGTTATGAGACAGAAATAGGAGACTAGTGTCTGTACTGCTGTATAAAACCTCCGTTATGGATACAAAtatcagctttttttttcttcttctcaaaacacacaatatattgtaCTATATTTCCCTGAACACACTTTTCACTTTTTCTTTTATTCGATTGTTAAATTTCCAGATGATGTTTAGGTGAAGTGCTTAACAACAAACATAGGAACTGTACCATATGAGAATAGACAGCTTTTTATCTGTGATTGAAGATCTATTTGGTCGACGCTTTGCAagcagtgactttttttttttgttgtctttcTTTCGATTCTGATTTCGTTTCGATTTCTTTCTAAATTCACGGCTTGTTTCCTTCATTGTGTACGTGATGCAAAGATagacgaagaaaaaaaaacaagtattctACAGTTCTTTTACAGTCGATATTTTATACAGGTgatgtttcattcattttcatcaagGGCTACGAAAAAAAATGTGCCGTGCGAAATCCTGAAACGATTGGTCACTGTCGGACGTGCGAGGAGAAACTTCACTTTTGTGATCGGTTTGAGCAGATTCAGAAATGCACCCATTTCCACCACGTGTTACTTCTTATTTGATCACTTTTGCTGCCATGCATCGGAGTTCATCACGTGCCACGGTCATCAGACTCTTTCTTGATGGATATAAAACCTGACGTGTTCTTTGTAAAACGAAACCTGTGTGAACTCAGTGTTTTAGTGGGGTTTGGAAATCTCACCATTTTGTAACTCCAGTGTTTTCTTAGATATCCGTAGTGAGTTAGATTTGAAGAAACCAATGATACCAAGCAAACCATGGAGCACTAGACCATCCGAAATACCATAGTATTGACGCATTTCATTCTTCGAATGAATCTTTTGACATTGAGTTCAAGGCTCTGCCCACTATAAGAACGTATTAGATGCATTGCTTCTGGAAGGGgaggtttatttgtttattttgcatcATTCTTAATGCACTTTTTGGGTTTTTTCGTGCCACAAGGCGAATGCCTGAAATGCTTAGACCGTTTGAGCAACACATATCCATTAATGTGCCAGTTCCAGAAGTCTCATATTGAACGTTCCCTCAAGAACCTCTACCTCTGTGAACCGTCTTATGTTTTTCGGGGCATTTTAGGATTGGTAGACATGCGACAAGCACACTTCTTTAGTCCGCAGGGCACAGTTGATGAGGTTTGGAGGCCaaactttgtttgtttattggatCTTGCCAATGACCTGCATGTATTGTCTGCGCTTCAAACACTGAACACAGCAAACAGCACTTTCCTCAGGTCAGATGTGATTTGTTGGCCGGCTTCTGAGTGGAAAAAATAGTACCAGTTTTGGATTATGAATCGTTTGCCTGGAGCTTTACGCTTTGGTTCTGCAGTTGATAGTTTTCACGTGACATCACACACAAAACTTCACTATCTCCTGCTGACCGACAAGTATTTTAGCCAAAAAGCAAGAAAACTGTTATGCAATAAGATATAGTATTACTAACCAATAAGGAGACACATCTAGGGTGTCcttctacacaattccttcatagAAAGATCAGCCAGAAAGGAGAAATGTACGGATATGTGCCGAATGGTAGCATGGTTGACCCATAACAATCCTTTAGCTGTCTCTATTCTATACAGTTTCTATTGTAATTTGCAGGTTAAGTGCAATTAAAGTATAAATTCCAATGCAAAAGTCAAACTATGAATCGCTCAATTGAACAAATAGATTTCATCCACTAatccaagcaaaaaaaaaaaaacgacgtCAAACATACAAGCAGACACTTGAGCTTAACACAGATCCTTCTCGGAGCTCTCTACTTATCTAAATCATATGTGTTAAACAAGTTAGACATGCAAAATAAACAGCGCAAGGACCTGGATTGAGAATCGCTAGTCTTTCCAAACTGGATATATCGCCCTCATAAGGACACTTTAGAGTTAAAACAATCATGGCCGACATAATGGGGTTGCTCCAAACCGAAGTGCGCAAAATCAGCCACTTCGAATGGGTTTTCTAATTGAAAAGTACAACTGGTGGACACGTCGGTCCCCTATGATCCTCTGCGTAGGGAAGTTGTTTGGTGTCAAACAGCATGCTTCATTCAGAATGGTTCCTCCCTATGTCATAATCCCTTTGAAGCGGTCGCTCCCTTTAAAGATATTAGGGCATATTGATGAAATTTTCCAAATGGAACTTCTGTAGTAGCTCAAAATTAGCCTCTTCGTAGGGGTCTTCTGAATGAAGGGTTTTGCTGGTGGACGCTTCGGGCCCCCATGATCTTTTGGGTAGGGAAGTTGTTTGGTGTCAAACAGCACGATTCATTCAGAATGGTTCCTCACTATGCCATAATCCTTTTGAAGCGGTCACTCCCTTCAAAGACATTAGGGACTTGAGTGCACTTTTTATATAGTTTCTAATTTGCAGGCTAAGTGCAATTTTAGTATACATTCAAATGCTGAAGTCAAAATATGAATAGCTAAAGAGAACAAATAGATTCCGTTCACTAGCAGTAAATATTAATCTAAGCAAAAGAAACCGACACCAAACATAAAAGCAGACAATTGAGCGCGCTTTTCATGTAGTTTCTAATCTAATTTGCAGGTTAAGTGCAATTAAAGTATGAACTGAAATGCGAAGTTAAAGCAGAAGTAAACAAATAAGATTCATCCAAGCTAAAGAAACCGACACCAAACACAAAAGCAGACACTTTTCCACATAAATCCATCACTAATGactaaatctctgaggaatattcacAAGATAAAGGTAAACATCACCAGATTGGAGCTGTAACAGAGAGATGACAGTTTGAAATGACTGAGAAATGGCTGCAAGTGCAGAATATGGATCACAAGTGCTCACAATTTACTGTTTGTGATTATATCTCATTTTATATGTGATCCAAATATTCGTAACTTCAAACGTATGGAAAtttgagcagatttttttttacaattttagggAGATCACATTGTAGCTGCCGTTACGGCCTATTGTTTTTTTGCCCGGTCTCCAGGCAGGTCACGTGACTGAAAACTATCAACGGACAGATGAATAGACATATCGGTACTGACGGCTGTTTTCAAAGGCAGTTTAG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033418 lncRNA downstream 261463 52202119 ~ 52204072 (-) True XLOC_016926
TCONS_00033967 lncRNA downstream 361925 52100990 ~ 52103610 (-) True XLOC_016925
TCONS_00033966 lncRNA downstream 362941 52100990 ~ 52102594 (-) False XLOC_016925
TCONS_00033072 lncRNA downstream 708425 51738686 ~ 51757110 (-) False XLOC_016919
TCONS_00033077 lncRNA downstream 708425 51752508 ~ 51757110 (-) False XLOC_016919
TCONS_00033969 lncRNA upstream 159313 52628252 ~ 52681748 (-) False XLOC_016931
TCONS_00033970 lncRNA upstream 186542 52655481 ~ 52681788 (-) True XLOC_016931
TCONS_00033971 lncRNA upstream 458757 52927696 ~ 52929721 (-) True XLOC_016934
TCONS_00033419 lncRNA upstream 727864 53196803 ~ 53201908 (-) True XLOC_016935
TCONS_00033972 lncRNA upstream 1684511 54153450 ~ 54155169 (-) True XLOC_016944
TCONS_00033086 mRNA downstream 10010 52406565 ~ 52455525 (-) False XLOC_016928
TCONS_00033085 mRNA downstream 10010 52406565 ~ 52455525 (-) True XLOC_016928
TCONS_00033084 mRNA downstream 100284 52332022 ~ 52365251 (-) True XLOC_016927
TCONS_00033082 mRNA downstream 445486 51888033 ~ 52020049 (-) False XLOC_016924
TCONS_00033083 mRNA downstream 445486 52019783 ~ 52020049 (-) True XLOC_016924
TCONS_00033087 mRNA upstream 915 52469854 ~ 52550135 (-) True XLOC_016930
TCONS_00033088 mRNA upstream 313117 52782056 ~ 52795722 (-) True XLOC_016932
TCONS_00033089 mRNA upstream 341923 52810862 ~ 52841762 (-) True XLOC_016933
TCONS_00033091 mRNA upstream 596100 53065039 ~ 53201840 (-) False XLOC_016935
TCONS_00033090 mRNA upstream 596100 53065039 ~ 53201840 (-) False XLOC_016935
TCONS_00033081 other downstream 615264 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033075 other downstream 708425 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033076 other downstream 708425 51752508 ~ 51757110 (-) True XLOC_016919
TCONS_00033073 other downstream 716194 51746255 ~ 51749341 (-) False XLOC_016919
TCONS_00033071 other downstream 716600 51738686 ~ 51748935 (-) False XLOC_016919
TCONS_00033102 other upstream 2258367 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 2836150 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 3424799 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 3467435 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033120 other upstream 3573573 56042512 ~ 56042630 (-) True XLOC_016962

Expression Profile

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