RNA id: TCONS_00033970


Basic Information

Item Value
RNA id TCONS_00033970
length 440
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_016931
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52628252 ~ 52681788 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGGTCTGGTTTGATCACATGACATACATAATCATCATGTGACTCCCTAAATTAAGATGGCTCCTTACATTGTTAGCTTGGCGTTGACAATGCGCAACATGTGCCTGAAACATTTGCCCAGTTTTGTTTAAATTGCTTAAATAAATTAATCTCACTTAtgtctttttacattttattttttgagagtGAGCAGACTTTTTTCCAGTTACCTCATTCAATATCACCAACCAAACAATGTCTTCATAATTCCTGCAGCTTCAGAGTTGCTGCTTAAATCCACCAAGAACATAAGAGGTCTTCGAAGTGTGCACTACCCAGGGTACTTTCTTCACCAGTCTAGCAATGGATGGATTTCTCCAGctcctctctgcatctccagTCCGCTGAagtacacgacaagctaactggacaaactggttgcggcgggaaagccctccac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033968 lncRNA downstream 186542 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033418 lncRNA downstream 451409 52202119 ~ 52204072 (-) True XLOC_016926
TCONS_00033967 lncRNA downstream 551871 52100990 ~ 52103610 (-) True XLOC_016925
TCONS_00033966 lncRNA downstream 552887 52100990 ~ 52102594 (-) False XLOC_016925
TCONS_00033077 lncRNA downstream 898371 51752508 ~ 51757110 (-) False XLOC_016919
TCONS_00033971 lncRNA upstream 245908 52927696 ~ 52929721 (-) True XLOC_016934
TCONS_00033419 lncRNA upstream 515015 53196803 ~ 53201908 (-) True XLOC_016935
TCONS_00033972 lncRNA upstream 1471662 54153450 ~ 54155169 (-) True XLOC_016944
TCONS_00033973 lncRNA upstream 2102036 54783824 ~ 54787578 (-) True XLOC_016948
TCONS_00033974 lncRNA upstream 2301535 54983323 ~ 54984480 (-) False XLOC_016950
TCONS_00033087 mRNA downstream 105346 52469854 ~ 52550135 (-) True XLOC_016930
TCONS_00033086 mRNA downstream 199956 52406565 ~ 52455525 (-) False XLOC_016928
TCONS_00033085 mRNA downstream 199956 52406565 ~ 52455525 (-) True XLOC_016928
TCONS_00033084 mRNA downstream 290230 52332022 ~ 52365251 (-) True XLOC_016927
TCONS_00033083 mRNA downstream 635432 52019783 ~ 52020049 (-) True XLOC_016924
TCONS_00033088 mRNA upstream 100268 52782056 ~ 52795722 (-) True XLOC_016932
TCONS_00033089 mRNA upstream 129074 52810862 ~ 52841762 (-) True XLOC_016933
TCONS_00033091 mRNA upstream 383251 53065039 ~ 53201840 (-) False XLOC_016935
TCONS_00033090 mRNA upstream 383251 53065039 ~ 53201840 (-) False XLOC_016935
TCONS_00033092 mRNA upstream 778085 53459873 ~ 53481912 (-) True XLOC_016936
TCONS_00033081 other downstream 805210 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033075 other downstream 898371 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033076 other downstream 898371 51752508 ~ 51757110 (-) True XLOC_016919
TCONS_00033073 other downstream 906140 51746255 ~ 51749341 (-) False XLOC_016919
TCONS_00033071 other downstream 906546 51738686 ~ 51748935 (-) False XLOC_016919
TCONS_00033102 other upstream 2045518 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 2623301 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 3211950 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 3254586 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033120 other upstream 3360724 56042512 ~ 56042630 (-) True XLOC_016962

Expression Profile

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