RNA id: TCONS_00033092


Basic Information

Item Value
RNA id TCONS_00033092
length 846
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_016936
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 53459873 ~ 53481912 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGGTGCTTTTCGGGGTGTTTTTGCTGATTGCTGTCCTCACGTCTTTGATGTGGAGAGACACGTTTGACCCAGAGTCAATTCGTGGGACCCGAGTGTTGATCACAGGGGCCAGTTCAGGCATCGGGGAGCAGATGGCCTACCATTATGCAAAGTTTGGAGCTGAGATCGTCATCACCGCCAGACGATTGGAGGCTTTAAAAAAGGTCACCCAGAAGTGTGAGAAACTGGGCGCTAAGAAAATAATGTATGTGACCGGAGACATGTCTGACCCCGCTGACCCCGAGAGAGTCCTCAAATACACCATCGAGAAATTGGGCGGTCTGGATTTTCTAGTGTTAAATCATGTCGGAAACACTAACGTGGGGCTGTGGAACAGAGATGCAGATCATGTCAGGTCACTCATGCAGGTGAATTTTGTGAGTTACGTGCAGATGGCGGGAGCAGCTCTACCTGTGCTGGAAACATCCGGCGGCTCAATCATTGTAGTTTCCTCACTGGCAGGTAAGATAGCAAGTCCATTTGTAACTCCGTATTCATCTACTAAGTTTGCGATGAATGGATTCTTCGGAGCGTTGCAGAAGGAATTGGCCATCCAGAAAAGCAACGTGTCTGTGTCCATCCAGATCCTTGGCCTCATCGACACAGAATCAGCCATGAGGAAGATCAGAGGATACACCACGATGACGGCTTATCCTGCCAGTGAAGCCGCTCTGAGCATCATCAAAGCCGGAGCGACCCGTCAGAAAGTGGCTTTTTATCCCTGGTTCCACTATTTGACCTGCCTGATCAATGATATCTTCCCCTTTTTGACAGATCTGCTGTCAGGCCTCAGGTGGGATTAA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101130-4 Predicted to enable oxidoreductase activity. Human ortholog(s) of this gene implicated in cortisone reductase deficiency; cortisone reductase deficiency 2; and obesity. Orthologous to several human genes including HSD11B1L (hydroxysteroid 11-beta dehydrogenase 1 like).

Ensembl:

ensembl_id ENSDART00000189610

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033419 lncRNA downstream 257965 53196803 ~ 53201908 (-) True XLOC_016935
TCONS_00033971 lncRNA downstream 530152 52927696 ~ 52929721 (-) True XLOC_016934
TCONS_00033970 lncRNA downstream 778085 52655481 ~ 52681788 (-) True XLOC_016931
TCONS_00033969 lncRNA downstream 778125 52628252 ~ 52681748 (-) False XLOC_016931
TCONS_00033968 lncRNA downstream 990934 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033972 lncRNA upstream 671538 54153450 ~ 54155169 (-) True XLOC_016944
TCONS_00033973 lncRNA upstream 1301912 54783824 ~ 54787578 (-) True XLOC_016948
TCONS_00033974 lncRNA upstream 1501411 54983323 ~ 54984480 (-) False XLOC_016950
TCONS_00033975 lncRNA upstream 1501518 54983430 ~ 54984653 (-) True XLOC_016950
TCONS_00033976 lncRNA upstream 1577914 55059826 ~ 55071544 (-) True XLOC_016951
TCONS_00033091 mRNA downstream 258033 53065039 ~ 53201840 (-) False XLOC_016935
TCONS_00033090 mRNA downstream 258033 53065039 ~ 53201840 (-) False XLOC_016935
TCONS_00033089 mRNA downstream 618111 52810862 ~ 52841762 (-) True XLOC_016933
TCONS_00033088 mRNA downstream 664151 52782056 ~ 52795722 (-) True XLOC_016932
TCONS_00033087 mRNA downstream 909738 52469854 ~ 52550135 (-) True XLOC_016930
TCONS_00033093 mRNA upstream 1410 53483322 ~ 53500424 (-) True XLOC_016937
TCONS_00033094 mRNA upstream 19838 53501750 ~ 53525896 (-) True XLOC_016938
TCONS_00033095 mRNA upstream 100445 53582357 ~ 53592532 (-) True XLOC_016939
TCONS_00033096 mRNA upstream 408094 53890006 ~ 53896300 (-) True XLOC_016940
TCONS_00033097 mRNA upstream 427550 53909462 ~ 53925308 (-) True XLOC_016941
TCONS_00033081 other downstream 1609602 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033075 other downstream 1702763 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033076 other downstream 1702763 51752508 ~ 51757110 (-) True XLOC_016919
TCONS_00033073 other downstream 1710532 51746255 ~ 51749341 (-) False XLOC_016919
TCONS_00033071 other downstream 1710938 51738686 ~ 51748935 (-) False XLOC_016919
TCONS_00033102 other upstream 1245394 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 1823177 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 2411826 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 2454462 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033120 other upstream 2560600 56042512 ~ 56042630 (-) True XLOC_016962

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01052392_00000373_00002024.mRNA True 481 mRNA 0.45 2 CI01052392 242 ~ 2024 (-)