XLOC_016939 (ccl25a)


Basic Information

Item Value
gene id XLOC_016939
gene name ccl25a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 53582357 ~ 53592532 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033095
tatacacacactgGCAAACATGCGCTTCAGCATCTTCATCTTTATCTTCCTCCTGGGCTTCATCTACCTCACAACGGCACAAGGATCATATGAGGACTGCTGTCTGAAATACGTCAGGAAAATCAACCACTCCATGAAGAACAGAGTGATCCGCTACAGAAAACAAGAGGTGGACGGAGGGTGCAACATCCCAGCCATTGTCTTCACACTGAAACAAGGCCGGATGTTCTGCACCGATCCCAGAGAAAAGTGGGTCCATGAACTCATGCAGAGGGTGGACAGACTGAAAGCAAGACCATATTTGAAGAGGAAGACTTCAAGAGGCTAAACAAGCCACTAGCAACCAAAAGAGGACCCGAGAGAAAGCATCCCAAAGAGTCTCAGCTAATCACATTCTTTCTGGCTCTACGAGGGCTCATTTCAGCATGGAGTGACTGTCAGTAATTGCTGTGTTCTGTCTGTGCTCTCTGGGCTCTCAGGCGACACTTCTTGTTTTCAGACCTTTGTCGCTTCACTGATGTTGGACTGCTGTTAAACGCTCAGAATGAGAGATTATATTCATTTCTCACACACTGCTGTTAAACACTGAGAATGAGAGTTATATTCATTTCTCACACACTACTGTTAAACACTCAGAATCACTCTGATTTAAAACCCTGTTTGATTCTAAAGTCTGAATTACATGTTATAAGCACTGATTAGCATGCACACATGAAAAGatacacaatttaattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacatcagCCTGAACTCATGacgaaacgtaactattttacagtttaattgtacaaaaatgtatgattttttggTGGAGGTGGTGTGGCACCAAACACCGGCCCCAAACTCAACCatcattgggagatgagcaaattGTATCAAATGGTAACCGTACGTAATTGTAAATCAAACAGTTCTGAATTGCCATTGGATAGCGttgataatatatacataaaacagTAATATAAGTGtagaaaaaatgcatttaaaagatTATATTATGACAAATATTATGAgtgataaaatgcatttaaacttgttaaacatttaaatccATCGCACGTTTAGTGTTGTCACCTTGTGGACAATCGAAGCTGTGCAAAAACAATTTCAAGGATATTCGCATGTTTTAACGAAAAAAATTGAGCATTTAACAATACATCACATTTACATGCATTCATATAGCAGACGCtgttatccaaagtgacttacaaaatTTGCAGTATAGACatcataaaaatctaaaaatcaacccaggctcattcggattatgtacccctgtatacatttttggagagtgccaaatacgtcccaaaagatgcatttttttgcagtttttgttttcgcgaatccaccagaggccgatgtgtaagctttttcagatctcaaatttctcacgTTTTTCTAAAATTTCTCCTGCTGTTTATGCatgaatctaccagaggccgctgtcgactgacttactgaccaaccgaccgatccCCTCACCCACCGTttttcttaaacccaaccaatagtgttttcaaaagcactgactaAGCCGCCCCCCgtcttccctaaactcaaccaatagtattttcaaaagcatcaaCTGACCCGCCccccgccttccctaaacccaacaaagtgttttcaaaagcaccgactaaCCCGCCCCctgtcttccctaaacccaaccaataatgtttttaaagcatcgactgacccgcccaccaccttccctaaacccaaccaatgtttttttttaaaagcattgactgacccgcccaccaccttccctgaacccaaccaatagtgtttttaaaagcatcgactgacccaccctccaccttccctgaacccaaccaatggtgttttcaaaagcaccgactaaCCCGCCccgtcttccctaaacccaaccaataatgtttttaaagcatcgactgacccgcccaccaccttccctaaacccaaccaatagtttttttaaaagcattgactgacccgcccaccaccttccctgaacccaaccaatagtgttttcaaaagcactgactaAGCCGCCCCCCgtcttccctaaactcaaccaatagtattttcaaaagcatcaaCTGACCCGCCCCCcgccttccccaaacccaacaaatagtgttttcaaaagcaccgactaaCCCGCCCCCTgtctcccctaaacccaaccaataatgtttttaaagcattgactgacccgcccaccaccttccctgaacccaaccaatagtgtttttaaaagcatcgactgacccacccaccaccttccctgaacccaaccaatagtgttttcaaaagcaccgattgacccgcctatcgccttccctaaacccaaccaatagtgttttcaaaagcaccgactgactgAGTAATAATGATCACTTCTCATGTGTATTGCCTCTCCTAGTTGAATCTCTGAAAGCCtcttcaattgtaagtcgcttgagccaaagcgtctgctaaatgactgatTGTAAAAATGTCTAAGCAAGCTATTTAACCATCAAAAAGACTTCTAACAACACAAACATTAATTTCAGTGCCTTGCACTGCTACTATTCTGTGTTTTATTAAGTGCATACTACTTATATATCTAATCTTTTCTCAATTTATGCAATATATATGATGCATAAATGAACATACTGGGAGTTTGTAACAGAGTTTATGATGTGTACAGCACAACCTGAGGGTCATGTTAAGCTAAGTTTATGAGCTTTCACTTTGGACACTTTGATTTACCGCTTTTGGCCCGTGGTATCTACAATAAAATGTCTGTGTGATCAAATCTAAAGTAGGATTTAGCCATAAAATGTGGGTGGGAAAGCAGATAGTGCTATTTCCTTATGAGTTTATTACACTTCTGACACAACGACAAGTGATTTTGTTGTACAATATTATGATGCATTGTAAATTatgatttgttgtttatttttttacatcattttagtttttgttaaaatgAAAAGCTCAGTTATATATTTTAGATTCTTTATCCTgcatatttcatttgttttatatgtttaatagagtttatattttttattaaagcgAAACTGAAACTGTTTTTCACTTTAGTGTTCACTTGATCCAGTGAGAATGTATTTTATAGAGGAAGTGATGTATTGAAATGTATTGTTTGGCTGTGTTTAAAACTGGATCACAAGCTCTTTTGATTCAATACCTGGTAAAATATTCTTACACTGCTGATTTTGCtcgtttattaaaataaaagtctttaaaaacaaCCTGATTTatcttcttttttctgtttttcatgaTCATGCATGTTCATTAAAGTGATTCCTTTATGTTTGTCATGATCACCTGCGATCCAGCCAGTGCAGATCGCTGGCAAACACACAGTATTGCATAGAACTAAAAATCTGCCATTAAATGGACTACAacatccagtcatgcaccactcacacacctggcctagatttCCATGATTGCAGACAGACACAGCTTGTGCTTTTTATGAACTAATTACTAGGAATATTTACAcagcacaaacacatgcatgcgtgctcacacacatacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggcacgtgcagagaccgtccaaagggcatttGCAGGACAAATTTTTTTGAAGAACGGGGGGTGGGGTGGGGAGGGTGttgttgtcgcgcacgtactgaAGAGCAGTGTTGTCGGgcacgttctgatcagctgtgttgtcgcgcgcgtactgtaaagcgggggagGAGGGGTtgagcgcgcgtactcaagagcagtgttgtcgtgtgcctactgaagggcgggacggagggtgtgtcgcgtcacggggcacttttgatcattttggaagggcactttctattcaagactaaaaagggcatgtgcactgcacaggttgagccctatgtgtgcatgtgcctgcgacacacacacacagacagacagacagacagacacagtcTCTCTttagggctgagtcttgtttatctgtctaGTGAACATTACGATtagttttccttgccttgtcctgccatgttttgaCCCTAGCCTTATTAGTTAGTTAATTTACTCTGCCTGCAAATGTAAAAATCAAAGCTTTGTGCatcatagagaataatatttagtcaattttacagttgatttaaatattttatttcaaattgagtcagagttttaataatttaggggtttacagtgtattcaATATACTAAAAATAGGGAttcattactgtatataaaaacaatgaaGGCATAACCTTAAAacacaaagcttgtgcatcatagagaataatatttagacaatttttacagttcatttgaatatttaattCAAATGGTGTCCGAGTCTATCTAATTTAGGGGTTTACAGTGTGTTCAACATACTGAAAATAGGGAttcattactgtatataaaatcaacgaAAGCATCACTGTAAAACACAaagtttgtgcatcatagagaataatatttagacaattttacagttgatttaaatattatatttcaaatggTGTCCGAGTTTCATTAATTTAggggtttacagtgtattcaatatactgaaaatatggattcattactgtatataaaatcaataaaggcataactgtaaaacacaaagcttgtgcatcatagagaataatatttagaccATTTTACAGtagatttgaatattttatttcaaatggtGTCAAGGGCTGTTTCAAAGATTGTGGTATTTTAAGCATGCACACTCTGGACATCAGAGACCTTTTTTACATCTGGTAAAAAAAGGGCATAGTAGAtcccctttaaaatgttttataaaacaatTGAGCATTATCTGTCAAACTAAGAGTGAAATTGATGTAAATCAGTTGATAGGAGTCCTTGAGATGATCCAAAGATctctaaaagcatttaaaaagcattttggcAAATCAAAACAAGGGCACATGACAGTTTAGAAGACAAATCTGTCTGTTATAatccatttcaaaatatatataagtGATTGTTTCAAACGTGCTGTAACCTACTTTCACTTTCCTATGAAATAAAAGGCGTGTTGTGCAATAACCAGA

Function

symbol description
ccl25a Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Acts upstream of or within lymphoid lineage cell migration into thymus; thymocyte migration; and thymus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; immune system; and oocyte. Orthologous to several human genes including CCL25 (C-C motif chemokine ligand 25).

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0072679 thymocyte migration biological_process
GO:0002548 monocyte chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0071346 cellular response to interferon-gamma biological_process
GO:0071347 cellular response to interleukin-1 biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0048538 thymus development biological_process
GO:0048247 lymphocyte chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0097535 lymphoid lineage cell migration into thymus biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0048020 CCR chemokine receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110222-1 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Acts upstream of or within lymphoid lineage cell migration into thymus; thymocyte migration; and thymus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; immune system; and oocyte. Orthologous to several human genes including CCL25 (C-C motif chemokine ligand 25).

Ensembl:

ensembl_id ENSDARG00000115610

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033095 True 5160 mRNA 0.38 4 53582357 53592532

Neighbor

gene id symbol gene type direction distance location
XLOC_016938 im:7138239 coding downstream 56461 53501750 ~ 53525896 (-)
XLOC_016937 admp coding downstream 81933 53483322 ~ 53500424 (-)
XLOC_016936 hsd11b1lb coding downstream 100445 53459873 ~ 53481912 (-)
XLOC_016935 sirt6 coding downstream 380449 53065039 ~ 53201908 (-)
XLOC_016934 NA coding downstream 652636 52927696 ~ 52929721 (-)
XLOC_016940 capsla coding upstream 297474 53890006 ~ 53896300 (-)
XLOC_016941 FO834855.1 coding upstream 316930 53909462 ~ 53925308 (-)
XLOC_016942 abhd8a coding upstream 423426 54015958 ~ 54039293 (-)
XLOC_016943 CABZ01050249.1 coding upstream 451146 54043678 ~ 54054225 (-)
XLOC_016944 NA coding upstream 560918 54153450 ~ 54155169 (-)
XLOC_016931 NA non-coding downstream 900569 52628252 ~ 52681788 (-)
XLOC_016929 NA non-coding downstream 1113418 52465535 ~ 52468939 (-)
XLOC_016926 NA non-coding downstream 1378285 52202119 ~ 52204072 (-)
XLOC_016925 NA non-coding downstream 1478747 52100990 ~ 52103610 (-)
XLOC_016947 FQ378001.1 non-coding upstream 1134774 54727306 ~ 54727426 (-)
XLOC_016948 NA non-coding upstream 1191292 54783824 ~ 54787578 (-)
XLOC_016950 NA non-coding upstream 1390791 54983323 ~ 54984653 (-)
XLOC_016951 NA non-coding upstream 1467294 55059826 ~ 55071544 (-)

Expression


Co-expression Network