RNA id: TCONS_00033095


Basic Information

Item Value
RNA id TCONS_00033095
length 5160
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_016939
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 53582357 ~ 53592532 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatacacacactgGCAAACATGCGCTTCAGCATCTTCATCTTTATCTTCCTCCTGGGCTTCATCTACCTCACAACGGCACAAGGATCATATGAGGACTGCTGTCTGAAATACGTCAGGAAAATCAACCACTCCATGAAGAACAGAGTGATCCGCTACAGAAAACAAGAGGTGGACGGAGGGTGCAACATCCCAGCCATTGTCTTCACACTGAAACAAGGCCGGATGTTCTGCACCGATCCCAGAGAAAAGTGGGTCCATGAACTCATGCAGAGGGTGGACAGACTGAAAGCAAGACCATATTTGAAGAGGAAGACTTCAAGAGGCTAAACAAGCCACTAGCAACCAAAAGAGGACCCGAGAGAAAGCATCCCAAAGAGTCTCAGCTAATCACATTCTTTCTGGCTCTACGAGGGCTCATTTCAGCATGGAGTGACTGTCAGTAATTGCTGTGTTCTGTCTGTGCTCTCTGGGCTCTCAGGCGACACTTCTTGTTTTCAGACCTTTGTCGCTTCACTGATGTTGGACTGCTGTTAAACGCTCAGAATGAGAGATTATATTCATTTCTCACACACTGCTGTTAAACACTGAGAATGAGAGTTATATTCATTTCTCACACACTACTGTTAAACACTCAGAATCACTCTGATTTAAAACCCTGTTTGATTCTAAAGTCTGAATTACATGTTATAAGCACTGATTAGCATGCACACATGAAAAGatacacaatttaattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacatcagCCTGAACTCATGacgaaacgtaactattttacagtttaattgtacaaaaatgtatgattttttggTGGAGGTGGTGTGGCACCAAACACCGGCCCCAAACTCAACCatcattgggagatgagcaaattGTATCAAATGGTAACCGTACGTAATTGTAAATCAAACAGTTCTGAATTGCCATTGGATAGCGttgataatatatacataaaacagTAATATAAGTGtagaaaaaatgcatttaaaagatTATATTATGACAAATATTATGAgtgataaaatgcatttaaacttgttaaacatttaaatccATCGCACGTTTAGTGTTGTCACCTTGTGGACAATCGAAGCTGTGCAAAAACAATTTCAAGGATATTCGCATGTTTTAACGAAAAAAATTGAGCATTTAACAATACATCACATTTACATGCATTCATATAGCAGACGCtgttatccaaagtgacttacaaaatTTGCAGTATAGACatcataaaaatctaaaaatcaacccaggctcattcggattatgtacccctgtatacatttttggagagtgccaaatacgtcccaaaagatgcatttttttgcagtttttgttttcgcgaatccaccagaggccgatgtgtaagctttttcagatctcaaatttctcacgTTTTTCTAAAATTTCTCCTGCTGTTTATGCatgaatctaccagaggccgctgtcgactgacttactgaccaaccgaccgatccCCTCACCCACCGTttttcttaaacccaaccaatagtgttttcaaaagcactgactaAGCCGCCCCCCgtcttccctaaactcaaccaatagtattttcaaaagcatcaaCTGACCCGCCccccgccttccctaaacccaacaaagtgttttcaaaagcaccgactaaCCCGCCCCctgtcttccctaaacccaaccaataatgtttttaaagcatcgactgacccgcccaccaccttccctaaacccaaccaatgtttttttttaaaagcattgactgacccgcccaccaccttccctgaacccaaccaatagtgtttttaaaagcatcgactgacccaccctccaccttccctgaacccaaccaatggtgttttcaaaagcaccgactaaCCCGCCccgtcttccctaaacccaaccaataatgtttttaaagcatcgactgacccgcccaccaccttccctaaacccaaccaatagtttttttaaaagcattgactgacccgcccaccaccttccctgaacccaaccaatagtgttttcaaaagcactgactaAGCCGCCCCCCgtcttccctaaactcaaccaatagtattttcaaaagcatcaaCTGACCCGCCCCCcgccttccccaaacccaacaaatagtgttttcaaaagcaccgactaaCCCGCCCCCTgtctcccctaaacccaaccaataatgtttttaaagcattgactgacccgcccaccaccttccctgaacccaaccaatagtgtttttaaaagcatcgactgacccacccaccaccttccctgaacccaaccaatagtgttttcaaaagcaccgattgacccgcctatcgccttccctaaacccaaccaatagtgttttcaaaagcaccgactgactgAGTAATAATGATCACTTCTCATGTGTATTGCCTCTCCTAGTTGAATCTCTGAAAGCCtcttcaattgtaagtcgcttgagccaaagcgtctgctaaatgactgatTGTAAAAATGTCTAAGCAAGCTATTTAACCATCAAAAAGACTTCTAACAACACAAACATTAATTTCAGTGCCTTGCACTGCTACTATTCTGTGTTTTATTAAGTGCATACTACTTATATATCTAATCTTTTCTCAATTTATGCAATATATATGATGCATAAATGAACATACTGGGAGTTTGTAACAGAGTTTATGATGTGTACAGCACAACCTGAGGGTCATGTTAAGCTAAGTTTATGAGCTTTCACTTTGGACACTTTGATTTACCGCTTTTGGCCCGTGGTATCTACAATAAAATGTCTGTGTGATCAAATCTAAAGTAGGATTTAGCCATAAAATGTGGGTGGGAAAGCAGATAGTGCTATTTCCTTATGAGTTTATTACACTTCTGACACAACGACAAGTGATTTTGTTGTACAATATTATGATGCATTGTAAATTatgatttgttgtttatttttttacatcattttagtttttgttaaaatgAAAAGCTCAGTTATATATTTTAGATTCTTTATCCTgcatatttcatttgttttatatgtttaatagagtttatattttttattaaagcgAAACTGAAACTGTTTTTCACTTTAGTGTTCACTTGATCCAGTGAGAATGTATTTTATAGAGGAAGTGATGTATTGAAATGTATTGTTTGGCTGTGTTTAAAACTGGATCACAAGCTCTTTTGATTCAATACCTGGTAAAATATTCTTACACTGCTGATTTTGCtcgtttattaaaataaaagtctttaaaaacaaCCTGATTTatcttcttttttctgtttttcatgaTCATGCATGTTCATTAAAGTGATTCCTTTATGTTTGTCATGATCACCTGCGATCCAGCCAGTGCAGATCGCTGGCAAACACACAGTATTGCATAGAACTAAAAATCTGCCATTAAATGGACTACAacatccagtcatgcaccactcacacacctggcctagatttCCATGATTGCAGACAGACACAGCTTGTGCTTTTTATGAACTAATTACTAGGAATATTTACAcagcacaaacacatgcatgcgtgctcacacacatacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggcacgtgcagagaccgtccaaagggcatttGCAGGACAAATTTTTTTGAAGAACGGGGGGTGGGGTGGGGAGGGTGttgttgtcgcgcacgtactgaAGAGCAGTGTTGTCGGgcacgttctgatcagctgtgttgtcgcgcgcgtactgtaaagcgggggagGAGGGGTtgagcgcgcgtactcaagagcagtgttgtcgtgtgcctactgaagggcgggacggagggtgtgtcgcgtcacggggcacttttgatcattttggaagggcactttctattcaagactaaaaagggcatgtgcactgcacaggttgagccctatgtgtgcatgtgcctgcgacacacacacacagacagacagacagacagacacagtcTCTCTttagggctgagtcttgtttatctgtctaGTGAACATTACGATtagttttccttgccttgtcctgccatgttttgaCCCTAGCCTTATTAGTTAGTTAATTTACTCTGCCTGCAAATGTAAAAATCAAAGCTTTGTGCatcatagagaataatatttagtcaattttacagttgatttaaatattttatttcaaattgagtcagagttttaataatttaggggtttacagtgtattcaATATACTAAAAATAGGGAttcattactgtatataaaaacaatgaaGGCATAACCTTAAAacacaaagcttgtgcatcatagagaataatatttagacaatttttacagttcatttgaatatttaattCAAATGGTGTCCGAGTCTATCTAATTTAGGGGTTTACAGTGTGTTCAACATACTGAAAATAGGGAttcattactgtatataaaatcaacgaAAGCATCACTGTAAAACACAaagtttgtgcatcatagagaataatatttagacaattttacagttgatttaaatattatatttcaaatggTGTCCGAGTTTCATTAATTTAggggtttacagtgtattcaatatactgaaaatatggattcattactgtatataaaatcaataaaggcataactgtaaaacacaaagcttgtgcatcatagagaataatatttagaccATTTTACAGtagatttgaatattttatttcaaatggtGTCAAGGGCTGTTTCAAAGATTGTGGTATTTTAAGCATGCACACTCTGGACATCAGAGACCTTTTTTACATCTGGTAAAAAAAGGGCATAGTAGAtcccctttaaaatgttttataaaacaatTGAGCATTATCTGTCAAACTAAGAGTGAAATTGATGTAAATCAGTTGATAGGAGTCCTTGAGATGATCCAAAGATctctaaaagcatttaaaaagcattttggcAAATCAAAACAAGGGCACATGACAGTTTAGAAGACAAATCTGTCTGTTATAatccatttcaaaatatatataagtGATTGTTTCAAACGTGCTGTAACCTACTTTCACTTTCCTATGAAATAAAAGGCGTGTTGTGCAATAACCAGA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0072679 thymocyte migration biological_process
GO:0002548 monocyte chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0071346 cellular response to interferon-gamma biological_process
GO:0071347 cellular response to interleukin-1 biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0048538 thymus development biological_process
GO:0048247 lymphocyte chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0097535 lymphoid lineage cell migration into thymus biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0048020 CCR chemokine receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110222-1 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Acts upstream of or within lymphoid lineage cell migration into thymus; thymocyte migration; and thymus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; immune system; and oocyte. Orthologous to several human genes including CCL25 (C-C motif chemokine ligand 25).

Ensembl:

ensembl_id ENSDART00000184066

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033419 lncRNA downstream 380449 53196803 ~ 53201908 (-) True XLOC_016935
TCONS_00033971 lncRNA downstream 652636 52927696 ~ 52929721 (-) True XLOC_016934
TCONS_00033970 lncRNA downstream 900569 52655481 ~ 52681788 (-) True XLOC_016931
TCONS_00033969 lncRNA downstream 900609 52628252 ~ 52681748 (-) False XLOC_016931
TCONS_00033968 lncRNA downstream 1113418 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033972 lncRNA upstream 560918 54153450 ~ 54155169 (-) True XLOC_016944
TCONS_00033973 lncRNA upstream 1191292 54783824 ~ 54787578 (-) True XLOC_016948
TCONS_00033974 lncRNA upstream 1390791 54983323 ~ 54984480 (-) False XLOC_016950
TCONS_00033975 lncRNA upstream 1390898 54983430 ~ 54984653 (-) True XLOC_016950
TCONS_00033976 lncRNA upstream 1467294 55059826 ~ 55071544 (-) True XLOC_016951
TCONS_00033094 mRNA downstream 56461 53501750 ~ 53525896 (-) True XLOC_016938
TCONS_00033093 mRNA downstream 81933 53483322 ~ 53500424 (-) True XLOC_016937
TCONS_00033092 mRNA downstream 100445 53459873 ~ 53481912 (-) True XLOC_016936
TCONS_00033091 mRNA downstream 380517 53065039 ~ 53201840 (-) False XLOC_016935
TCONS_00033090 mRNA downstream 380517 53065039 ~ 53201840 (-) False XLOC_016935
TCONS_00033096 mRNA upstream 297474 53890006 ~ 53896300 (-) True XLOC_016940
TCONS_00033097 mRNA upstream 316930 53909462 ~ 53925308 (-) True XLOC_016941
TCONS_00033098 mRNA upstream 423426 54015958 ~ 54039293 (-) True XLOC_016942
TCONS_00033099 mRNA upstream 451146 54043678 ~ 54054225 (-) True XLOC_016943
TCONS_00033100 mRNA upstream 771741 54364273 ~ 54387550 (-) True XLOC_016945
TCONS_00033081 other downstream 1732086 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033075 other downstream 1825247 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033076 other downstream 1825247 51752508 ~ 51757110 (-) True XLOC_016919
TCONS_00033073 other downstream 1833016 51746255 ~ 51749341 (-) False XLOC_016919
TCONS_00033071 other downstream 1833422 51738686 ~ 51748935 (-) False XLOC_016919
TCONS_00033102 other upstream 1134774 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 1712557 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 2301206 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 2343842 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033120 other upstream 2449980 56042512 ~ 56042630 (-) True XLOC_016962

Expression Profile

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