XLOC_016937 (admp)


Basic Information

Item Value
gene id XLOC_016937
gene name admp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 53483322 ~ 53500424 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033093
ATGTTGTATGCAATGTTCTTTGCAATGTTGTCCACAATGATGGGACTCTCTTTCGCCCGGCCCGGGTTTTTCAACGAGCTGGAGGAACATTTAGCGGTGGAAAGCGAGCCTAAAGTGCGGTCGGAGGCGATCAGGAGGCTTTTGGAGGTGTTTGGGATGGAAGATCCTCCTGCTGCTTTGGGTCACAAACAGCCTCCTCAGTATATGCTGGACCTGTACAACACCATCGCTGATGTCGACGGAGTCACCAAAGACCCGACGCTGCTCGAGGGAAACACGGTCCGGAGCTTCTTCGACAAATTGCACAGTGAACGAATCGAGTATCTCTTCAACATGTCCACTGTAGCCAAGAGTGAGAAGATCCTGACGGCTGAACTTCACCTGTTCAAACTCAGACCAAAAACATCAATCGTCTTAAACAGACATCACTTCTGTCAGGTCAGTGTGTATCAGGTTCTGGACAGCAGCAAAAAAAACGTCTCGCAAGGGAAGAAGCTGCTCTCATCCAGACTGGTTCCAATTCACTCTACTGGCTGGGAGGTTTTTACCATCACTCAAGCTGTGCGCTCGTGGATGTCGGACGAGGGCAGTAATCTGGGTCTGCTGGTCTCAGTCAGGACTCTCGCAGGCTCTCAGATGGACCTAAAAATGGTGCGTTTCGCATCAGGTCGGGATCATCATCACAGCAAACAGCCCATGCTGGTCCTGTTCACTGATGACGGGAGACGAGCTGCTTCTCTGGAGGCTACAAGTAAAGGTTCAGATGTTTCTCCTGGCGGCTCCAGTCAGCCGCTTCCCAGTGTCCCGGCGTCCCGGCGTAGCTCTCGCTCTGTGGATTATGACGAGAGAGGAGAAAAGATGGCCTGTCAGCGTCAGCCGCTGTACGTTGACTTTGAGGAGATCGGCTGGTCCGGTTGGATCGTATCTCCCAAAGGATACAATGCGTATCACTGCAAAGGCTCCTGTATATTTCCCTTGAGCCAGAATATGAGGCCCACGAACCACGCCATCGTCCAGTCCATCATAAACACCCTCAAACTCAACAAAGGCATTCAGACGCCCTGCTGCGTCCCGGACAAACTCTACAGCATCAGCCTGCTATACTTTGATGATGACGAGAATGTGGTGCTGAAACAGTATGATGATATGGTGGCCGGAAGCTGCGGGTgtcgctgaaaaaaaaaaaaaaacagatttacctCAGTGTTTAATGCAAAATCTGGataaaattgtaaatatgtaCATAGATAGACAATATTAATATATGGAGGAGGCTGAGACGATCCCTtgtaataaaatgtacattttgtaaaTTGCATGTCGTGAACTATTATGAAGTCTAAATAAATTCTTACGCAAAAATAGTTTGGGGGTTTTGTTATTGTGAGAGTAGAAGACAAGAGCATTATCCCTCCTGTgacattatttttcaaatattcgGTTTATTTAAACAGCTCTGATTGAATTTGACCAAAAGAAGAAAATCATAAAGGAAATGACTTAAGAATAGAGATGCagcgattatagattttggttgtacgattatagtttGAGAAATATTCTCAGTTTTAcagttattatgattattatgcaataattaatttcaaaacatgactaggcgaggcagtggcgcagtaggtagtgctgtcgcctcacagcaagaaggtcgctgtcgCTCAGTTGGtcgctcggctcagttggcgtttctgtgtggagtttgcatgttctccctgccttcgcgtgggtttcctccgggtgctcctgtttcccccacagtccaaagacatgttgtttggtagtgtacgagtgtgtgtgtgaatgtgtgagtggatgtttcccagagatgggttgcggctggaagggcatctgctgcgtaaaaacttgctggataagttggtggttcattccgctgtggcgaccctggattaataaagggactaagccgacaagaaaatgaatgaatgaatgaaaacgtgactagtttagtaaatcacatgaaaacttctaatattaaagtgttgtttattgctggTCAGTAACTaaaaaatacagcacaaattaatattaaaaacaaacaatagttcaTTTCTTTTTGGACTTAAAATTAAGTGAAAAAAAagttggtttgtttttgtatttaaacataagtaataattttacactgaaaatacatGACaggacaataaataaattaataaaaataaaataatttattgtgttgattttttttctctttaaagtagaaatgtgtatattccataaaaAGGATGAAGGTATGGCTGAAAAGCGTGAGCACGTCGATCCTAATATGCTCGCGTAAGCAGTGCACCTCTACtgaaaataacgaacttgcgcaAGTAAAGACACACTCCGGGAATAAGTAAGTAACCTCAGCCACAGTTAATCCAGTGTccgtggttattagtcttggtgtacaagcTCGAAACTTCAAACTTGTGCACAGTTGGCTTTacttttagttgcagcagttttgttccgtgcagaaatGCGGTGGTGAAgtcctttacgattaattaaccatgatGAATTAAACCGCGGTTAAAAGTGAAATCGTTTAATCAGTACATCCCTACTTGAGAATGAGTCGGACTGCATTGTGAATTTTAATGTTTGAGTCGACTGTCCATTTAAGAACAGACATACTTTTGCTGAGTTTTAATATGGCTTGAAGGTtccataacaataaaataaagttttatttatttttttttttttttatatgttagtATTAGTATTGCTAGTTTTTatagtcaatctagggccatatatacttgcaaaataaaagaaagttttgcaaacaaaacaaaaaaaagtattgagcaaaaaaaaaaaggcaaatctccaaaaattgcaaacaaattctttttttaagaaacaaaaattattaattttgctaacaaaaataaagaattgcAAAGGG

Function

symbol description
admp Predicted to enable cytokine activity. Acts upstream of or within Spemann organizer formation at the embryonic shield and determination of ventral identity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including DEL; blastomere; mesoderm; notochord; and presumptive structure.

GO:

id name namespace
GO:0060395 SMAD protein signal transduction biological_process
GO:0048264 determination of ventral identity biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0060063 Spemann organizer formation at the embryonic shield biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011214-1 Predicted to enable cytokine activity. Acts upstream of or within Spemann organizer formation at the embryonic shield and determination of ventral identity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including DEL; blastomere; mesoderm; notochord; and presumptive structure.

Ensembl:

ensembl_id ENSDARG00000025372

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033093 True 2941 mRNA 0.41 5 53483322 53500424

Neighbor

gene id symbol gene type direction distance location
XLOC_016936 hsd11b1lb coding downstream 1410 53459873 ~ 53481912 (-)
XLOC_016935 sirt6 coding downstream 281414 53065039 ~ 53201908 (-)
XLOC_016934 NA coding downstream 553601 52927696 ~ 52929721 (-)
XLOC_016933 ralbp1 coding downstream 641560 52810862 ~ 52841762 (-)
XLOC_016932 LO018490.1 coding downstream 687600 52782056 ~ 52795722 (-)
XLOC_016938 im:7138239 coding upstream 1326 53501750 ~ 53525896 (-)
XLOC_016939 ccl25a coding upstream 81933 53582357 ~ 53592532 (-)
XLOC_016940 capsla coding upstream 389582 53890006 ~ 53896300 (-)
XLOC_016941 FO834855.1 coding upstream 409038 53909462 ~ 53925308 (-)
XLOC_016942 abhd8a coding upstream 515534 54015958 ~ 54039293 (-)
XLOC_016931 NA non-coding downstream 801534 52628252 ~ 52681788 (-)
XLOC_016929 NA non-coding downstream 1014383 52465535 ~ 52468939 (-)
XLOC_016926 NA non-coding downstream 1279250 52202119 ~ 52204072 (-)
XLOC_016925 NA non-coding downstream 1379712 52100990 ~ 52103610 (-)
XLOC_016944 NA non-coding upstream 653026 54153450 ~ 54155169 (-)
XLOC_016947 FQ378001.1 non-coding upstream 1226882 54727306 ~ 54727426 (-)
XLOC_016948 NA non-coding upstream 1283400 54783824 ~ 54787578 (-)
XLOC_016950 NA non-coding upstream 1482899 54983323 ~ 54984653 (-)
XLOC_016951 NA non-coding upstream 1559402 55059826 ~ 55071544 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000075_00275752_00278496 NA misc CI01000075 null 275238 ~ 278542 (-)