RNA id: TCONS_00033966


Basic Information

Item Value
RNA id TCONS_00033966
length 849
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id XLOC_016925
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52100990 ~ 52103610 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTATGAGTCAACAAAgGCAACAGCTTCAGCTAAAATCATCTTCAAAGTCCTACTGGAGAAAAAAATACATCTTGATGATCTGaagttgaataaatgaacaactaaTCGTTATTTTTTTGGAGGTGAACTTTCCAATTAAGACATTGTTTTTCTGACACATTGATCAAAAGTGAGACTTTACTAAAGAATGTAATAAACATCCGCCAGTGAGATATGAAAAATTAAGATGAAAACCATACTGTTAAACATTCTCAACATTTGTAAGCAAAAACTCTTTCATTTTGatcaaatgaaaattctgtcatcgtttgcgcaactttgacttgttccaaacccgttTCTTGTTatattgaagatattttgaagaaagctgaagaaCTCTAATCATTCatttccatattatttgtttttcctacaatagatgtcaatggttacaggtttccagcattcttcaaaatatcttcttttgtgttcaactgaagaaagaatcACATAAAAGTTTGAACCCCCTTGCAggcgagtaaatagtgagtaaatgttaatgtTTTGGTAAATTATTccttaatgtaattttaattaccAAGATTTAAGAAACTTTAGACATTTATCAAAAGCTAAAATCACGTTTTGCAGTCTAAATGCAGGATTTCCATCATGTGCGACTAAATAAATCCCCAAAAATCTTTATAATTTCAAAGCTGTTCACCATATCATTCACTATACAGCAGGAGCTTGTGTTTCTTCACAGGAAAAATACTCATTACTTTAGCATTAACAGAAAAATATGCTAAATCTTTGGGTACTATCTTAAAGATTAtcttattaaaacattacaataacTCCAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033072 lncRNA downstream 343880 51738686 ~ 51757110 (-) False XLOC_016919
TCONS_00033077 lncRNA downstream 343880 51752508 ~ 51757110 (-) False XLOC_016919
TCONS_00033069 lncRNA downstream 351631 51737097 ~ 51749359 (-) False XLOC_016919
TCONS_00033965 lncRNA downstream 616666 51483547 ~ 51484324 (-) True XLOC_016909
TCONS_00033417 lncRNA downstream 623935 51473916 ~ 51477055 (-) True XLOC_016907
TCONS_00033418 lncRNA upstream 99525 52202119 ~ 52204072 (-) True XLOC_016926
TCONS_00033968 lncRNA upstream 362941 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033969 lncRNA upstream 525658 52628252 ~ 52681748 (-) False XLOC_016931
TCONS_00033970 lncRNA upstream 552887 52655481 ~ 52681788 (-) True XLOC_016931
TCONS_00033971 lncRNA upstream 825102 52927696 ~ 52929721 (-) True XLOC_016934
TCONS_00033082 mRNA downstream 80941 51888033 ~ 52020049 (-) False XLOC_016924
TCONS_00033083 mRNA downstream 80941 52019783 ~ 52020049 (-) True XLOC_016924
TCONS_00033080 mRNA downstream 306518 51790494 ~ 51794472 (-) True XLOC_016922
TCONS_00033079 mRNA downstream 323752 51774062 ~ 51777238 (-) True XLOC_016921
TCONS_00033078 mRNA downstream 328552 51765179 ~ 51772438 (-) True XLOC_016920
TCONS_00033084 mRNA upstream 229428 52332022 ~ 52365251 (-) True XLOC_016927
TCONS_00033086 mRNA upstream 303971 52406565 ~ 52455525 (-) False XLOC_016928
TCONS_00033085 mRNA upstream 303971 52406565 ~ 52455525 (-) True XLOC_016928
TCONS_00033087 mRNA upstream 367260 52469854 ~ 52550135 (-) True XLOC_016930
TCONS_00033088 mRNA upstream 679462 52782056 ~ 52795722 (-) True XLOC_016932
TCONS_00033081 other downstream 250719 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033075 other downstream 343880 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033076 other downstream 343880 51752508 ~ 51757110 (-) True XLOC_016919
TCONS_00033073 other downstream 351649 51746255 ~ 51749341 (-) False XLOC_016919
TCONS_00033071 other downstream 352055 51738686 ~ 51748935 (-) False XLOC_016919
TCONS_00033102 other upstream 2624712 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 3202495 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 3791144 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 3833780 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033120 other upstream 3939918 56042512 ~ 56042630 (-) True XLOC_016962