RNA id: TCONS_00033074


Basic Information

Item Value
RNA id TCONS_00033074
length 2270
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_016919
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51737097 ~ 51757328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATAAACTGCcaatttcttaataataggcaggtaatacgcAGGAAAACTGAGAAAATGTCCTTAAATTAAAGTGCTACCAATTCTGAACACAGTGAAAATAAGTGTTTGATGGAAAGCCTGAATTAAACTATAAGCAAATCTATCACTCAATGGAATGTAGACATATGACATATTCATAATCACTATGATTGACCAGGATTTTGATTTTCCTCAACAGAATAATGAAGGTTCTGCTGCTGGCTCTTGTTCTCGCACTGGTGTTTGCCAACGgcTCTTCCTTGACATGTCACAGATGTATCCCTGACATACCTGGAGGAAACTGCGGGTTCACTGAAGAGACCTGTGTCAACGATCAAAATGCGTGTGTAGCTGTCGCCTACAAGAAATTTCCCTATTCCTACTTCCGGAGGTGCATCAACATGGAAGACTGCTCGGCTCTTGAGTCCAATCGCCATTTATATGCCAGATGCTGTCAGACGGATCTCTGCAATTAACCAACCCATCATCTAAACCCACAGAACACAAAGGAAAAGTGTGGCATTTAAGAGCAGGTCATCGGATAGCTGGGGCGGATTTAACATTTAAGCCAGGTAGGTGGTTACTGCGCAAAGGCTGCGAGAGCGTCAAAGGTCGCTTTGGCCGCCTTcacgacaacgctgtctgccttcagctccagcGGTGAAAGCGTCAAAATTCGCTTCGTCAtgaagttgacttgatttcaactctcctcgacgcccacaccggcgaagacgcgccgcacTGCTCCTTGCCGCTTCTCGCCGCTTATTGCCGCCGGCTCtcgttgaaaatgaatgacttccggctgcTTTGACACTCTCGCCGCTTTCTGTGTGAACATACGGTTAGGGCCCCAAGAAATCATGTGGCCCCAGTAAACACCTATTCATTAAACATAGATTGAGGATAAGCACTATTCACTATTATAGCATAGGCTTTTTGTGGTtgtttaaagggcatctatggtgaaaaatctacttttcaagctgtttggacagacgtgtgtagaaAAAATATACTCTCATAagacaaatataaaatgtaaagtgATTTCTGCAGCACATATAGCACTTAATCATTGTTTTCAGATGATCTGCTCATCTCTCTCTACCTCTCATCAGCACTAATGAAAATAGTTGCAACTAGCTATCACAACATCAaatgctcacggggctgcgagagaataaataagaagagcggagcgaGACAGGAGTGAGGctatgatcaaataaataaaaaaaaaagtgtgactgcgaCTTTCTCCGTTCgtcatgctggagaggaacagtctgcgcaaatggAGCGTAGAGTGGGTGTCATCGACTACAGcgctcatctgattggctgaaaggtacgagttgccCTGCCTCTGCCTGgacagtctcaaaaatacacacacacgtatccagggggagtcgtacgtgaaagaggatttgcacattcccATTCAGGATGAAcgcgcaagttttaaacattcaaaactttttgtacactcttatacatttgcaaatggtgttttgcatttgtgaaacgtattttaagaaaatttatttttatttagtgcacatgaaatttttttgtgaatataaataaatattttacgcacgtgaatttggctacgcatgtgtacatcgtgtcttttgcgtgaattactaTTGAGTCTTTTCTGACTCCATAGTAATGCACCAAGAAGTTGTATACCAACCGCTAATAAAACTCAGAAGAAGTGACCGGCGGCGTCTCTCTCTGAATCGTAGATGGTGTGACCGCAGTGAAATCTTTGTGTTGTTTCCAATGTTTTGCAATAATCAATGTCTTTCCTGGCATTACGGCTGAATAAATATCCGTAATGTGAACATCGAGATGCACAACAGCGGTGAATGTTTGCTGATGGTTAAGTTCATTGACggaacaaaaaagaaatgcaaccctTGCAACAAAACTAGTTATTATTGTGAAGCACTTTCTCttccttacaaaaataaataagtattgcattaataataattaataagtaaTGCTGACTAACCGTCCGCGCTTTTGtttgctttcatctgttatttcttgATGTCTGGAAAATATCTGCATGGGgaaaactatagtaattcataatagacatgtttttgaaccacataggAAAGTctataatgtgtacaactctttgttagCGCATGCTACAGAATAATGTAccatagtaaactgataaactgtaataaatactgtaaagttTGTGTAAACTGGTTCATTG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2657 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to act upstream of or within negative regulation of activation of membrane attack complex.

Ensembl:

ensembl_id ENSDART00000189286

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033069 lncRNA downstream 1402 51737097 ~ 51749359 (-) False XLOC_016919
TCONS_00033965 lncRNA downstream 266437 51483547 ~ 51484324 (-) True XLOC_016909
TCONS_00033417 lncRNA downstream 273706 51473916 ~ 51477055 (-) True XLOC_016907
TCONS_00033964 lncRNA downstream 275343 51473913 ~ 51475418 (-) False XLOC_016907
TCONS_00033963 lncRNA downstream 340813 51409231 ~ 51409948 (-) True XLOC_016901
TCONS_00033966 lncRNA upstream 343662 52100990 ~ 52102594 (-) False XLOC_016925
TCONS_00033967 lncRNA upstream 343662 52100990 ~ 52103610 (-) True XLOC_016925
TCONS_00033418 lncRNA upstream 444791 52202119 ~ 52204072 (-) True XLOC_016926
TCONS_00033968 lncRNA upstream 708207 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033969 lncRNA upstream 870924 52628252 ~ 52681748 (-) False XLOC_016931
TCONS_00033070 mRNA downstream 9050 51738261 ~ 51741711 (-) False XLOC_016919
TCONS_00033067 mRNA downstream 31322 51669228 ~ 51719439 (-) True XLOC_016918
TCONS_00033066 mRNA downstream 50052 51665527 ~ 51700709 (-) False XLOC_016918
TCONS_00033065 mRNA downstream 106717 51640591 ~ 51644044 (-) True XLOC_016917
TCONS_00033064 mRNA downstream 116330 51614252 ~ 51634431 (-) True XLOC_016916
TCONS_00033078 mRNA upstream 7851 51765179 ~ 51772438 (-) True XLOC_016920
TCONS_00033079 mRNA upstream 16734 51774062 ~ 51777238 (-) True XLOC_016921
TCONS_00033080 mRNA upstream 33166 51790494 ~ 51794472 (-) True XLOC_016922
TCONS_00033082 mRNA upstream 130705 51888033 ~ 52020049 (-) False XLOC_016924
TCONS_00033083 mRNA upstream 262455 52019783 ~ 52020049 (-) True XLOC_016924
TCONS_00033073 other downstream 1420 51746255 ~ 51749341 (-) False XLOC_016919
TCONS_00033071 other downstream 1826 51738686 ~ 51748935 (-) False XLOC_016919
TCONS_00033068 other downstream 9048 51737097 ~ 51741713 (-) False XLOC_016919
TCONS_00033052 other downstream 292533 51458113 ~ 51458228 (-) True XLOC_016905
TCONS_00033050 other downstream 321271 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033081 other upstream 92829 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033102 other upstream 2969978 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 3547761 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 4136410 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 4179046 55936374 ~ 56003795 (-) False XLOC_016960

Expression Profile

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