Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00033017 |
| length | 1779 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 8 |
| gene id | XLOC_016876 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 50133594 ~ 50198328 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0009410 | response to xenobiotic stimulus | biological_process |
| GO:0071466 | cellular response to xenobiotic stimulus | biological_process |
| GO:0006805 | xenobiotic metabolic process | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| GO:1990837 | sequence-specific double-stranded DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-051018-2 | Predicted to enable nuclear receptor activity and transcription cis-regulatory region binding activity. Acts upstream of or within cellular response to xenobiotic stimulus and regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Is expressed in caudal fin. Orthologous to human AHRR (aryl-hydrocarbon receptor repressor). |
| ensembl_id | ENSDART00000137704 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033015 | lncRNA | downstream | 19733 | 50108306 ~ 50113861 (-) | True | XLOC_016875 |
| TCONS_00033013 | lncRNA | downstream | 26976 | 50104811 ~ 50106618 (-) | False | XLOC_016875 |
| TCONS_00033008 | lncRNA | downstream | 281710 | 49844884 ~ 49851884 (-) | True | XLOC_016871 |
| TCONS_00033956 | lncRNA | downstream | 340174 | 49792207 ~ 49793420 (-) | True | XLOC_016870 |
| TCONS_00033005 | lncRNA | downstream | 340277 | 49792207 ~ 49793317 (-) | False | XLOC_016870 |
| TCONS_00033021 | lncRNA | upstream | 55927 | 50254255 ~ 50272025 (-) | True | XLOC_016878 |
| TCONS_00033957 | lncRNA | upstream | 576081 | 50774409 ~ 50790581 (-) | False | XLOC_016884 |
| TCONS_00033958 | lncRNA | upstream | 591765 | 50790093 ~ 50790598 (-) | True | XLOC_016884 |
| TCONS_00033959 | lncRNA | upstream | 977669 | 51175997 ~ 51189707 (-) | False | XLOC_016890 |
| TCONS_00033960 | lncRNA | upstream | 977669 | 51175997 ~ 51207447 (-) | True | XLOC_016890 |
| TCONS_00033014 | mRNA | downstream | 7257 | 50104811 ~ 50126337 (-) | False | XLOC_016875 |
| TCONS_00033011 | mRNA | downstream | 80588 | 49987088 ~ 50053006 (-) | False | XLOC_016874 |
| TCONS_00033012 | mRNA | downstream | 136539 | 49988381 ~ 49997055 (-) | True | XLOC_016874 |
| TCONS_00033010 | mRNA | downstream | 148243 | 49984159 ~ 49985351 (-) | True | XLOC_016873 |
| TCONS_00033009 | mRNA | downstream | 155367 | 49884696 ~ 49978227 (-) | True | XLOC_016872 |
| TCONS_00033018 | mRNA | upstream | 1410 | 50199738 ~ 50225495 (-) | False | XLOC_016877 |
| TCONS_00033019 | mRNA | upstream | 19620 | 50217948 ~ 50225411 (-) | True | XLOC_016877 |
| TCONS_00033020 | mRNA | upstream | 30855 | 50229183 ~ 50272077 (-) | False | XLOC_016878 |
| TCONS_00033022 | mRNA | upstream | 78427 | 50276755 ~ 50298337 (-) | False | XLOC_016879 |
| TCONS_00033023 | mRNA | upstream | 80188 | 50278516 ~ 50372467 (-) | True | XLOC_016879 |
| TCONS_00033003 | other | downstream | 364042 | 49767578 ~ 49769552 (-) | True | XLOC_016869 |
| TCONS_00033002 | other | downstream | 466545 | 49666756 ~ 49667049 (-) | True | XLOC_016868 |
| TCONS_00032992 | other | downstream | 1386782 | 48746683 ~ 48746812 (-) | True | XLOC_016857 |
| TCONS_00032991 | other | downstream | 1568648 | 48564830 ~ 48564946 (-) | True | XLOC_016852 |
| TCONS_00032983 | other | downstream | 1727389 | 48405272 ~ 48406205 (-) | True | XLOC_016843 |
| TCONS_00033024 | other | upstream | 275098 | 50473426 ~ 50473542 (-) | True | XLOC_016880 |
| TCONS_00033026 | other | upstream | 511038 | 50709366 ~ 50709482 (-) | True | XLOC_016882 |
| TCONS_00033049 | other | upstream | 1217175 | 51415503 ~ 51415811 (-) | True | XLOC_016902 |
| TCONS_00033050 | other | upstream | 1230845 | 51429173 ~ 51429490 (-) | True | XLOC_016903 |
| TCONS_00033052 | other | upstream | 1259785 | 51458113 ~ 51458228 (-) | True | XLOC_016905 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000073_00520095_00540186.mRNA | True | 1878 | mRNA | 0.48 | 7 | CI01000073 | 520095 ~ 540362 (+) |
