RNA id: TCONS_00033010


Basic Information

Item Value
RNA id TCONS_00033010
length 1113
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_016873
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49984159 ~ 49985351 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCGCTCCTTTACTCAAGCCATCGCAGACTGCAAGACACCAAAAATGGTTGACACTAATTGGAGTGATTTCGAGAGTTTTTTCAACGAGACATACAGTGAGGAGACCTATGAAGGCAGCATCGTAACCGCAGAGGTAATTTTATGCAAGAAAGCCGATGTGATTCGATTCAGTGCTGCATTTCTTCCAGCGTTTTACTATATTAACTTCTTGCTGAGCTTGCTTGGGAATGGACTGGTGCTGTGTATCATCTACAAGTTCGAGAAGCTCAGCACGGTCACCAATATCTTCTTACTCAACCTCGTGATATCAGATCTCATCTTCGCCTCCAGTCTTCCCTTTTGGGCAGTCTACCACAAATCCGAATGGATCTTCGGTAAGAATCTTTGCAAGTTTGTCGGCAGCTGTTACTCAGTCGGCTTCAACAGCTCCATCCTTTTCCTCACCCTCATGACTTTTGACCGCTATTTAGCCGTGGTCCACTCCATCGCAGCAGCCCAGAGCAGGAGAATGGCATATGCATTCGGATCATCCGCCGCTGTTTGGGTGGTCAGTATTGTGGCTAGCATCAAGGATATAGTTCTGTACGACGTAATGAAAACAGAAGACGGTTTGCTTTGCGAAATGACCGGTTACAATCAGACATTCCTCACAAAGTGGGAGCTTATCGGCTATTATCAGCAGTTTTTCCTCTTCTTTATGGTTCCTCTGATTATCGTTTTGTACTGCTATGTTCGGATCACCATCAGAATCATGTACACGAGACTGATGGAGAAGTGCAGGGCGGTCAAGCTCATTTTTATCATTGTGTTCACCTTCTTCATCTGCTGGACGCCTTACAATGTGGTCATCCTGTTAAAAGCCATTAAGACGTACTTCAAGGTCCAGAACGATTGCTCGAATGCTCTCGATTACGCGCTGTATGTGACTCGCAACTTTGCTTATCTCTACTGCTGCATCAGTCCTGTCTTCTACACTTTTTTGGGGAAGAAGTTCCAGAGTCATTTTCTGAAGCTTCTGTCCAAGCGTATACCATGTCTGAAGATTGATGCCATGTGGTCTACACAGAGCAGTAAGAACACGTCATTCAGGAGCCCAAATACTGATTTTTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-97 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000145888

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033008 lncRNA downstream 132275 49844884 ~ 49851884 (-) True XLOC_016871
TCONS_00033956 lncRNA downstream 190739 49792207 ~ 49793420 (-) True XLOC_016870
TCONS_00033005 lncRNA downstream 190842 49792207 ~ 49793317 (-) False XLOC_016870
TCONS_00033004 lncRNA downstream 191154 49792207 ~ 49793005 (-) False XLOC_016870
TCONS_00032999 lncRNA downstream 427595 49555790 ~ 49556564 (-) True XLOC_016866
TCONS_00033013 lncRNA upstream 119460 50104811 ~ 50106618 (-) False XLOC_016875
TCONS_00033015 lncRNA upstream 122955 50108306 ~ 50113861 (-) True XLOC_016875
TCONS_00033021 lncRNA upstream 268904 50254255 ~ 50272025 (-) True XLOC_016878
TCONS_00033957 lncRNA upstream 789058 50774409 ~ 50790581 (-) False XLOC_016884
TCONS_00033958 lncRNA upstream 804742 50790093 ~ 50790598 (-) True XLOC_016884
TCONS_00033009 mRNA downstream 5932 49884696 ~ 49978227 (-) True XLOC_016872
TCONS_00033006 mRNA downstream 123436 49844630 ~ 49860723 (-) False XLOC_016871
TCONS_00033007 mRNA downstream 129727 49844734 ~ 49854432 (-) False XLOC_016871
TCONS_00033001 mRNA downstream 357056 49612868 ~ 49627103 (-) True XLOC_016867
TCONS_00033000 mRNA downstream 357060 49608796 ~ 49627099 (-) False XLOC_016867
TCONS_00033011 mRNA upstream 1737 49987088 ~ 50053006 (-) False XLOC_016874
TCONS_00033012 mRNA upstream 3030 49988381 ~ 49997055 (-) True XLOC_016874
TCONS_00033014 mRNA upstream 119460 50104811 ~ 50126337 (-) False XLOC_016875
TCONS_00033017 mRNA upstream 148243 50133594 ~ 50198328 (-) False XLOC_016876
TCONS_00033016 mRNA upstream 148243 50133594 ~ 50198328 (-) True XLOC_016876
TCONS_00033003 other downstream 214607 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033002 other downstream 317110 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00032992 other downstream 1237347 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00032991 other downstream 1419213 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 1577954 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00033024 other upstream 488075 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 724015 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033049 other upstream 1430152 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033050 other upstream 1443822 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033052 other upstream 1472762 51458113 ~ 51458228 (-) True XLOC_016905

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000073_00627723_00630714.mRNA True 1780 mRNA 0.43 4 CI01000073 627723 ~ 631192 (+)