XLOC_016873 (ccr12a)


Basic Information

Item Value
gene id XLOC_016873
gene name ccr12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49984159 ~ 49985351 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033010
ACTCGCTCCTTTACTCAAGCCATCGCAGACTGCAAGACACCAAAAATGGTTGACACTAATTGGAGTGATTTCGAGAGTTTTTTCAACGAGACATACAGTGAGGAGACCTATGAAGGCAGCATCGTAACCGCAGAGGTAATTTTATGCAAGAAAGCCGATGTGATTCGATTCAGTGCTGCATTTCTTCCAGCGTTTTACTATATTAACTTCTTGCTGAGCTTGCTTGGGAATGGACTGGTGCTGTGTATCATCTACAAGTTCGAGAAGCTCAGCACGGTCACCAATATCTTCTTACTCAACCTCGTGATATCAGATCTCATCTTCGCCTCCAGTCTTCCCTTTTGGGCAGTCTACCACAAATCCGAATGGATCTTCGGTAAGAATCTTTGCAAGTTTGTCGGCAGCTGTTACTCAGTCGGCTTCAACAGCTCCATCCTTTTCCTCACCCTCATGACTTTTGACCGCTATTTAGCCGTGGTCCACTCCATCGCAGCAGCCCAGAGCAGGAGAATGGCATATGCATTCGGATCATCCGCCGCTGTTTGGGTGGTCAGTATTGTGGCTAGCATCAAGGATATAGTTCTGTACGACGTAATGAAAACAGAAGACGGTTTGCTTTGCGAAATGACCGGTTACAATCAGACATTCCTCACAAAGTGGGAGCTTATCGGCTATTATCAGCAGTTTTTCCTCTTCTTTATGGTTCCTCTGATTATCGTTTTGTACTGCTATGTTCGGATCACCATCAGAATCATGTACACGAGACTGATGGAGAAGTGCAGGGCGGTCAAGCTCATTTTTATCATTGTGTTCACCTTCTTCATCTGCTGGACGCCTTACAATGTGGTCATCCTGTTAAAAGCCATTAAGACGTACTTCAAGGTCCAGAACGATTGCTCGAATGCTCTCGATTACGCGCTGTATGTGACTCGCAACTTTGCTTATCTCTACTGCTGCATCAGTCCTGTCTTCTACACTTTTTTGGGGAAGAAGTTCCAGAGTCATTTTCTGAAGCTTCTGTCCAAGCGTATACCATGTCTGAAGATTGATGCCATGTGGTCTACACAGAGCAGTAAGAACACGTCATTCAGGAGCCCAAATACTGATTTTTGA

Function

symbol description
ccr12a Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-97 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000038541

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033010 True 1113 mRNA 0.45 2 49984159 49985351

Neighbor

gene id symbol gene type direction distance location
XLOC_016872 hecw1b coding downstream 5932 49884696 ~ 49978227 (-)
XLOC_016871 blvra coding downstream 123436 49844630 ~ 49860723 (-)
XLOC_016870 NA coding downstream 190739 49792207 ~ 49793420 (-)
XLOC_016869 BX284666.2 coding downstream 214607 49767578 ~ 49769552 (-)
XLOC_016868 BX323861.2 coding downstream 317110 49666756 ~ 49667049 (-)
XLOC_016874 si:ch211-106n13.3 coding upstream 1737 49987088 ~ 50053006 (-)
XLOC_016875 exoc3 coding upstream 119460 50104811 ~ 50126337 (-)
XLOC_016876 ahrrb coding upstream 148243 50133594 ~ 50198328 (-)
XLOC_016877 mcm6l coding upstream 214387 50199738 ~ 50225495 (-)
XLOC_016878 cul1a coding upstream 243832 50229183 ~ 50272077 (-)
XLOC_016865 NA non-coding downstream 461882 49521249 ~ 49522277 (-)
XLOC_016864 NA non-coding downstream 529706 49446787 ~ 49454453 (-)
XLOC_016880 CABZ01067968.1 non-coding upstream 488075 50473426 ~ 50473542 (-)
XLOC_016882 CABZ01053221.2 non-coding upstream 724015 50709366 ~ 50709482 (-)
XLOC_016884 NA non-coding upstream 789058 50774409 ~ 50790598 (-)
XLOC_016890 NA non-coding upstream 1190646 51175997 ~ 51207447 (-)
XLOC_016895 NA non-coding upstream 1313977 51299328 ~ 51303937 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000073_00627723_00630714 NA coding CI01000073 null 627723 ~ 631192 (+)