CI01000073_00627723_00630714


Basic Information

Item Value
gene id CI01000073_00627723_00630714
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000073
NCBI id null
chromosome length 1307889
location 627723 ~ 631192 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000073_00627723_00630714.mRNA
ATGGATTATCAAGAGGAGGACATTTACGATTTTTTCAAAGATGCCAATGACACGATAACAAATAACGTTGTAAACAAAGAGGTTCCTTTGTGCAAGAAAAGTGATGTCATCCAGTTTGGTGCAGCATTTCTCCCAGCGTTCTACTACACCAACTTCTTGCTGAGCTTGGTGGGGAATGGACTGGTGCTGTGCATCATCTACAAATATGAGAAGCTCTCCACGGTCACCAACATCTTCTTGCTCAACCTCGTCATTTCGGACCTGATCTTCGCCTCCAGCCTTCCATTTTGGGCAGTCTACCACAAGTCAGAATGGATCTTTGGCAGCTGCCTTTGCAAGTTGGTGGGAAGCTGTTATTCCATCGGCTTCAACAGCACCATCCTCTTCCTCACTCTCATGACTTTTGACCGCTACCTTGCGGTGGTCCACGCCATCAGTGCAGTCGGGAGGAGGAAGAAAACATACGCGTTTGCATCGTCCGCTACCGTTTGGGTGCTCAGTATATTGGCTAGTACAAAGGATATAGTTCTTTATGATGTGATGGATGGTTCAAATGGTAAGCTGTGCGAAGTGACTGGTTACTACCAGACTACCCTCACAAAGTGGGAGCTGATCGGCTATTATCAGCAGTTTCTCCTTTTCTTCCTAGTGCCTCTAGTTATGGTCCTGTACTGCTATGCCCACATAACCATCAAGATCATGTCCACACGCATGGCGGAGAAGTGCAGGGCAGTCAAACTCATCTTTATCATTGTCTTCACCTTCTTCATCTGCTGGACGCCTTACAACGTGGTCATTCTGTTAAAAGCCATCAAGACGTCCTTTGGAGACCCGAACAATTGCTCAGAAGCCCTTGACTACGCGCTGTACATAACGCGTAACTTTGCCTACCTGTACTGCTGCATCAGCCCTGTCTTTTATACCTTTTTGGGGAAGAAGTTTCAAAGCCATTTTCTGAAACTTTTGGCCAAGCGTATACCATGGTTGAAGATTGATAACTTGCTGTCAGTGCCAAGGACGATTAATCAGCAGCCAGTCGCTATCCAGACATCCAGTCAGCGTCCAGACTATCAGTGCGGAGAGCGCGCTCCTGGTACCCAGGAAATAGGATGTAGCATCTCCTGCGGTAGCTTTAGCAAACAGGGCAAATGTAAGGAAAGGGCGGCTGTTGTGCGGTTAATGTTGAACATCAGCCTCGGCCTCGCGCGTCTTTGTGTGGTGTGCGCGCGCGTTTGCGTGCACGTGCGTGTGTATTTGGCCCAGATGAGCATCCTCATTCCTGAACCCTACACTCGACACTGAACCTTAAACCGAAATCGACACAGTAACACTACAACTAAACCCACCATTTGTTCAAATATTATATAAAATTGTTTTAAAGATTTTTTAAGCATATTGTGCAGTTGTGCTTGGACTGGAGGCAGTTGTTTAATTTTCTGATAACGCACTGAAACACGTAATTTTTGGCGGTCGTATTAAACGAAATTATGGAAACATGCAAATTCAAGAAACCAACGAAATATTAATAACTTCAGTTTTAGTCAGTGTATGCTTTTTCCAGTGAGCTTTTTGCTTTTCTAAATATTTATTTTGCATAGTAAAATAAAACATGTAGCTGTCATTTGCCTTTTTTGCCAGATAATTATTCCAGATAAATACCTCAACCAAGTTTAGTGATTTGTTCTTCCCTCATATTTAAAATTATATAAAATATTTTCCTCATATTTTTATGGTTTAATCGAACTTGTAGGGTCATTAAAAATATCCCCCAAAAATTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000073_00627723_00630714.mRNA True 1780 mRNA 0.43 4 627723 631192

Neighbor

gene id symbol gene type direction distance location
CI01000073_00591004_00626411 NA coding upstream 542 591004 ~ 627181 (+)
CI01000073_00543374_00545899 EXOC3 coding upstream 81824 543374 ~ 545899 (+)
CI01000073_00520095_00540186 NA coding upstream 87361 520095 ~ 540362 (+)
CI01000073_00509393_00517498 MCM6L coding upstream 110112 509393 ~ 517611 (+)
CI01000073_00496969_00501063 NA coding upstream 126517 496969 ~ 501206 (+)
CI01000073_00638193_00673213 HECW1B, HECW1 coding downstream 7001 638193 ~ 673701 (+)
CI01000073_00688992_00691075 BLVRA coding downstream 57800 688992 ~ 691254 (+)
CI01000073_00790983_00791279 NA coding downstream 159334 790526 ~ 791521 (+)
CI01000073_00792429_00801911 CACTIN, CACTIN.L coding downstream 161237 792429 ~ 802248 (+)
CI01000073_00805997_00811146 NA coding downstream 174805 805997 ~ 811165 (+)
G287685 NA non-coding upstream 66806 560586 ~ 560917 (+)
G287672 NA non-coding upstream 119121 508178 ~ 508602 (+)
G287670 NA non-coding upstream 123235 503575 ~ 504488 (+)
G287627 NA non-coding upstream 243798 383722 ~ 383925 (+)
G287609 NA non-coding upstream 246163 381336 ~ 381560 (+)
G287650 NA non-coding downstream 87984 719176 ~ 722946 (+)
G287654 NA non-coding downstream 103017 734209 ~ 736197 (+)
G287666 NA non-coding downstream 105080 736272 ~ 737098 (+)
G287719 NA non-coding downstream 107492 738684 ~ 739756 (+)
G287720 NA non-coding downstream 108619 739811 ~ 740269 (+)
G287391 NA other upstream 427951 190944 ~ 199772 (+)
CI01000073_00048073_00049706 NA other upstream 537000 47933 ~ 50512 (+)
G287638 NA other downstream 77852 709044 ~ 718401 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016873 ccr12a coding NC_007113.7 CM002886.2 49984159 ~ 49985351 (-)