XLOC_016871 (blvra)


Basic Information

Item Value
gene id XLOC_016871
gene name blvra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49844630 ~ 49860723 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033006
ACGCGCGGTTACGAAAAAAGAGTTATGAAAGTAGTTTCCTGAGTCACAGTTGATGAATGTCATTATCGTTCTCATTTCGCTGACGTTGCGTAAGAAAACCACATCAAAGGCTGTGAGGGGACATTCACAGGAATCATGCTGGGATCAGTGGTTGTTGGAATTGGAATTGCAGGATCTGTGAGGATGAGAGATTTAATGGCTCCTCTCTCGTCCAGCGCCGCAGAACAGATCAGCATCAGGGGCTTTGTGTCCAGGAGGAGTCTTGAAGATCAGCAGGGTGTGAAGCAGATCAGCATGACTGAAGCGCTGAGCAGAGACGACATCCATGTGGCATTTATATGCACAGAAAACACCAGCCATGAAGAGAACATCAGGCAGTTTCTGGAGGCAGgaaagcatgtgtgtgtggagTATCCCATGACCCTCAGCCACACCTCTGCTGTGGATCTGTGGAATCTGGCTCAACAGAAGGGTCTGGTGCTTCATGAGGAACACATCGAGCTGTTCACTCCTGACTTCAAACAGCTGAAAAAAGACATTTCTGAAAAAACACTGGAGGAAGGAAAGCTGCACTTCACCGGTGGTCCTCTAAAGGCAAACTTTGGCTTCCCGTCTTTCAGTGGTATCGCCAGACTGACGTGGCTGGTGGTTCTGTTTGGAGAGCTCACAGTCACTTCAGTAGATCTGGTGGAGGAGAAAGAGAACAAGTACATGAAGATGACGGCACACTTACTGACTCAACAGCACAAGCCTCTGACGTGGATTGAAGAACGGGGTCCGGGTCTGGGCAGAGCCAAACACGTGGAGTTTCGCTTTCAGGATGTGACGATCACAGAGCTTCCAGCAGGTCAGCGTGAGCCGGTCGGACTCTTCATGCAGGATCTGCTGCTGTTCTGCCGGAAGCTGCAGGGGGAAGTTTCAGCTGCAGAGCTCCAGGCGGAGAGAAACAGGATCTTACACTGTCTGGAGCTAGCAGACCGCATTCAGCAGATCACCGAAAGCACTCACGCCTGAACATTAACTCACACTACCAAACATTCATTCTAATGTGGCACACACAGACTGTGTATAGAGACAGATAACTGAAGTGCTAAGTCAgattaaaatcattaaatata
>TCONS_00033007
GGAATCATGCTGGGATCAGTGGTTGTTGGAATTGGAATTGCAGGATCTGTGAGGATGAGAGATTTAATGGCTCCTCTCTCGTCCAGCGCCGCAGAACAGATCAGCATCAGGGGCTTTGTGTCCAGGAGGAGTCTTGAAGATCAGCAGGGTGTGAAGCAGATCAGCATGACTGAAGCGCTGAGCAGAGACGACATCCATGTGGCATTTATATGCACAGAAAACACCAGCCATGAAGAGAACATCAGGCAGTTTCTGGAGGCAGgaaagcatgtgtgtgtggagTATCCCATGACCCTCAGCCACACCTCTGCTGTGGATCTGTGGAATCTGGCTCAACAGAAGGGTCTGGTGCTTCATGAGGAACACATCGAGCTGTTCACTCCTGACTTCAAACAGCTGAAAAAAGACATTTCTGAAAAAACACTGGAGGAAGGAAAGCTGCACTTCACCGGTGGTCCTCTAAAGGCAAACTTTGGCTTCCCGTCTTTCAGTGGTATCGCCAGACTGACGTGGCTGGTGGTTCTGTTTGGAGAGCTCACAGTCACTTCAGTAGATCTGGTGGAGGAGAAAGAGAACAAGTACATGAAGATGACGGCACACTTACTGACTCAACAGCACAAGCCTCTGACGTGGATTGAAGAACGGGGTCCGGGTCTGGGCAGAGCCAAACACGTGGAGTTTCGCTTTCAGGATGTGACGATCACAGAGCTTCCAGCAGGTCAGCGTGAGCCGGTCGGACTCTTCATGCAGGATCTGCTGCTGTTCTGCCGGAAGCTGCAGGGGGAAGTTTCAGCTGCAGAGCTCCAGGCGGAGAGAAACAGGATCTTACACTGTCTGGAGCTAGCAGACCGCATTCAGCAGATCACCGAAAGCACTCACGCCTGA
>TCONS_00033008
cgcgcacacacataataTCCATAATCATCTCTCACATGCTTGTTTGAacatctctcgctctctctttctttgAAATGACCGTCTCTCCTCTGATCTGCTGGATCTCAGGCAGTTTCTGGAGGCAGgaaagcatgtgtgtgtggagTATCCCATGACCCTCAGCCACACCTCTGCTGTGGATCTGTGGAATCTGGCTCAACAGAAGGGTCTGGTGCTTCATGAGGAACACATCGAGCTGTTCACTCCTGACTTCAAACAGCTGAAAAAAGACATTTCTGAAAAAACACTGGAGGAAGGAAAGCTGCACTTCACCGGTGGTCCTCTAAAGGCAAACTTTGGCTTCCCGTCTTTCAGTGGTATCGCCAGACTGACGTGGCTGGTGGTTCTGTTTGGAGAGCTCACAGTCACTTCAGTAGATCTGGTGGAGGAGAAAGAGAACAAGTACATGAAGATGACGGCACACTTACTGACTCAACAGCACAAGCCTCTGACGTGGATTGAAGAACGGGGTCCGGGTCTGGGCAGAGCCAAACACGTGGAGTTTCGCTTTCAGGATGTGACGATCACAGAGCTTCCAGCAGGTCAGCGTGAGCCGGTC

Function

symbol description
blvra Predicted to enable biliberdin reductase NAD+ activity; biliverdin reductase (NADP+) activity; and zinc ion binding activity. Predicted to act upstream of or within heme catabolic process. Predicted to be located in cytoplasm. Is expressed in brain; gill; hematopoietic system; and liver. Orthologous to human BLVRA (biliverdin reductase A).

GO:

id name namespace
GO:0042167 heme catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004074 biliverdin reductase (NAD(P)+) activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

ZFIN:

id description
ZDB-GENE-060929-312 Predicted to enable biliberdin reductase NAD+ activity; biliverdin reductase (NADP+) activity; and zinc ion binding activity. Predicted to act upstream of or within heme catabolic process. Predicted to be located in cytoplasm. Is expressed in brain; gill; hematopoietic system; and liver. Orthologous to human BLVRA (biliverdin reductase A).

Ensembl:

ensembl_id ENSDARG00000059857

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033006 False 1118 mRNA 0.49 7 49844630 49860723
TCONS_00033007 False 885 mRNA 0.52 6 49844734 49854432
TCONS_00033008 True 598 lncRNA 0.50 4 49844884 49851884

Neighbor

gene id symbol gene type direction distance location
XLOC_016870 NA coding downstream 51210 49792207 ~ 49793420 (-)
XLOC_016869 BX284666.2 coding downstream 75078 49767578 ~ 49769552 (-)
XLOC_016868 BX323861.2 coding downstream 177581 49666756 ~ 49667049 (-)
XLOC_016867 cactin coding downstream 217527 49608796 ~ 49627103 (-)
XLOC_016866 si:ch211-209f23.3 coding downstream 286698 49555768 ~ 49557932 (-)
XLOC_016872 hecw1b coding upstream 23973 49884696 ~ 49978227 (-)
XLOC_016873 ccr12a coding upstream 123436 49984159 ~ 49985351 (-)
XLOC_016874 si:ch211-106n13.3 coding upstream 126365 49987088 ~ 50053006 (-)
XLOC_016875 exoc3 coding upstream 244088 50104811 ~ 50126337 (-)
XLOC_016876 ahrrb coding upstream 272871 50133594 ~ 50198328 (-)
XLOC_016865 NA non-coding downstream 322353 49521249 ~ 49522277 (-)
XLOC_016864 NA non-coding downstream 390177 49446787 ~ 49454453 (-)
XLOC_016880 CABZ01067968.1 non-coding upstream 612703 50473426 ~ 50473542 (-)
XLOC_016882 CABZ01053221.2 non-coding upstream 848643 50709366 ~ 50709482 (-)
XLOC_016884 NA non-coding upstream 913686 50774409 ~ 50790598 (-)
XLOC_016890 NA non-coding upstream 1315274 51175997 ~ 51207447 (-)
XLOC_016895 NA non-coding upstream 1438605 51299328 ~ 51303937 (-)

Expression


Co-expression Network