RNA id: TCONS_00033011


Basic Information

Item Value
RNA id TCONS_00033011
length 4129
RNA type mRNA
GC content 0.47
exon number 24
gene id XLOC_016874
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49987088 ~ 50053006 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGCAAATATTTTGCAGGTTGCAGCACAACACCCAATGACCTCGCATTCATCATCGATGGCTCCTCAAGCTTGGGTGTCCCTAACTTCGAAACAGCCAAGCGTTGGCTCATCAACATCACCAAAGGCTTTGACGTGAGCAGCAGACACACTCAGGTAGCGGTTGTCCAGTACAGTGACACCCCTCGACTGGAGATTCCTCTGGGAAAGCATCAGAACAGCCAAGAACTTGTCGAGGCGGTCGGCTCCGTCTCATACCTGGGGGGAAACACGCGGACTGGACGCGCCATCAAGTTTGCCACAGACCATGTCTTCGGGATGCCCAACCACACCTCCCAGTCTCCCAGAAACCGCATCGCTGTGGTTCTCACAGATGGCCGTTCACAGGATGACGTAGAGGACGCCGCTATGGAGGCCAGGGCGCAGAATATTGTTCTGTTTGCAGTCGGTGTGGGAAATGAAATCACTAATTCTGAGCTGGTGTCTATGGCTAATAAGCCAGCGTCTACTTACGTGCTGCATGTGGAGGATTACAACTCCATTGCTAGCATATGGGACCTGATGGAGCAGAAACTGTGCGAGGAATCAGTGTGTCCATTGCGGATCCCTGGAACGGTGAACGATCAGAAAGGTTTTGATCTAATGAGCCTGATGAAGATCGAGCAGGTGGCTCAGAAAGTTCAGGGCTCTTTGATATCAGAGAGAGCATCACAACTCAGCCCTCGCATGGACATCACCCACAAAACCAGAGAGATCTTTCCAGAAGGTCTTCCTCCAGCTTTTGTGTTTGTTGCCACTCTGCGCTTGAAGAATCCTGCTCACTGGATGAAGTTTGACCTCTTAAGAGTGTTATCTCAGGACGGGGTGAAGCAGATCGCTGTGACTGTGAACGGAGCCGACAAGTCGGTCATTTTCACCTGCACCAGCACTCTGAAGACAGAGCAGACCGTCATATTTAATGACCGAGGGAtcaagAGGCTCTTTGACACGGATTGGCACCAGCTGAAGTTCCTAGTGAAGCCCAGACGCATCACTTGTTTTGTGGATGGAGCATATGTAGAAGAGCAGCTCCTAGATCCAGTTGTTCCCATCTACATTAACGGAAAGACTCAGGTGGCCAAGAAAGTCAACATTGAAACAACCGTCCCTATTTTACTCCAGAAGTTGCGTCTGTACTGTGACCCTCAGCAGAGTGAGCGAGAGACGGCATGTGAAATTTATTCTGTGgtCTTATATAATGTTTTGTGTCCTCAGTGTCCTTCGGATCGCTCTCCTTCTGTAGAAGGTTGTGATTGTCCTAGTGGAAAACCTGGTTTGCCGGGTTTACCTGGGCCTATGGGTTTCAGGGGGGAGAAAGGCAGAGAGGGACCTCCGGGGGTAAAGCAGGGGAGAAAGGAACATCTGGAGAGCCTGGTCGAGATGGACAGAAAGGTGAAGCAGGTGAAACAGGACAAAAGGGGGAGCGAGGACTGGAAGGACCCAAGGGTGAAATGGGACCACCGGGGCCACCGGGGCCACCGGGGCCTTCAGGACCAGAAGGAATCCCAGGGGAGCCAGGAGAAACGGGACCACCCGGAATTCCCGGATCAAATGGTGAACCTGGGCCACCTGGTCTACCTGGACTTGAAGGTCCGAAGgGTGAAAAAGGAGTTGATGGATTGGCAGGATCAGATGGACAACCAGGAATTCCTGGTATACGAGGGCTTCCTGGAGAGATGGGGCCTGCTGGAGCTCAAGGACCACCCGGCCCAGTTGGCCCACCTGGCATTCAAGGTCCCCCTGGAGCAAAGGGGAATTCTGGGTCTCGCGGACAAGACGGCCTTCCTGGACCACCTGGTGTTAAAGGTTCCGATGGAGAGCACGGCATTCAGGGTCCACCTGGCATTAGGGGTCCACCAGGGCTTAAAGGCCACAAGGGTGAATCCGGATCATTGGGACCGAAAGGAAGGCGAGAAAGGAAACCAAGGAGAACCTGGAGGTGAACCGGGCCTGAAAGGAAACAAAGGAGAGCCAGGTGTAGCTGGAGATCCTGGGAACAGAGGCGCTGATGGGAAAAAAGGAGACGTGGGTCTGCCAGGGCCTCCCGGATCTCAAGGCTTTTCAGGACTAGATGGGTTACCAGGACAACCAGGACTTCCAGGTTACCCAGGGAAACCAGTGACCCAGCTGCCACAGCTCCTGCAGGCAATGGAGCAAAGAAGCTGCCAGCACTGTGAGACCAAACGAGGGCCAGCAGGCGATCCAGGTCCCCCAGGCCCAACGGGCCCATCTGGACCACCAGGGTATCCTGGCAGGGCAGGGTCTCCAGGATATCCAGGACCTCCGGGCAGCAGAGGGCCTGAGGGAGTCAAAGGTGATATTGGTCCGATGGGTATAAAAGGTGCTAAAGGACAGGGTGAAATTGGGTTGCCAGGTCCACCTGGCCaacaagGATTGCAAGGTTCACGTGGGGATGACGGTGAGGGATATCCTGGGCCTTCTGGTCCACCAGGGAAATCTGGCACTCCGGGCATCCCAGGCAAACGTGGGCCCCCAGGGTCTATGGGTGTTTGTGACCCATCCTCTTGTTATCAAGCCTATGGCTTTCGGGACGATCCTTTCAGGAAAGGACCCAACTTTTAGGGTCAGGATGATCCTGtacagtttgtttttctttctcaaaTGGACATTTCTGGTGCTCAGCATTGACCTCAGGAACTTACAACCTCTAAAGCCGTTTCTtaaccacgtttctggaggaccaccagctctgcacattttccatgtctccttaatcaaacacacctgattcacatcatcagctcattagcagaggtgaaaatgggtgtgacagacaaaggagacatccaaagccttcagtgctggtggtcctctaggagcatggttgagaaacactactcTAAAGTATGATGTCACGATCTTGACTTTAAACGTGTGACTTGTTTTCCTCTCTGAGAATCTAGTGTTGAATGTGTTTCTACTTACgctaactgtaaaaaaaacatgtgtcTTCCATCCCTTTTACAAAACATACCTATAGTAGCAATTCTCTTCAGTTTACAGCTAAATTGAAGACTGGGGGCAGTGAAACACTAAATTGTATGCCTCACATTAATATCAACGTTTTTAATGAACATGGCTCAGTAGCTCGTCTGGTAGCAAGGTAGCATAGTTGCTTTAGCAAATACACTGTTAGAAACACTATCAGTTTATAATTAGAATTTGTTATAGGTGATTTCTAAATTGCAGCGGCATGAACCATCTTCTCTCCTTGCCATACAttgaataaaatgtcattttagtgCCCCTCATTAGGCATTTTCctttaaactgctgtaaaatgcacTAAAGGAAATGTAATATACTCTAACTTCTGCAAAAAATGTCACTATAGACATATTTTCTTGAGCCTAGCTGTTTAAGATgcttattcatttatataaaaatcaTCATGACGCATGTCCTGCcggctatttatttaattatcggGAGCTCCAAAAAACTGACACAGCTAGCTTCATAAAAATAGTCACTTTTCTGAAGCCATACAGTAGCTTTGAGCTGGAAACACTAAAACGTATATCAGTATTTGGTGAAAATGCTTTCAAACATTGCGCATTGTTTGCGTATTGTACGTAGATCATTGATTCTCATTCATCCTGTGACCAATTTATTTGTcagttttagcttttgttttggaTGAACTGTTCCTTTACAGAAAACTATAAGAAAACTATACTGTATCCACTGCACTGCCCGACAAGCTACCTCTGCACGGGATGTGAAGCAATTTCTATGGGCTTTATGTTAAGATTTGAGAAACCCAAgggctgttttgtgtttgttactTTTTATAGGAACATTTTAACTACTATTTGTcttcatatatatttaattaccCTTTTTAGTTTGACTATTTGAACATGTCTCGTAGAATTTAGCTGTCGTTTTTTTAGCACGTCTGTTTTGTTTGACTGTGCAAAACTCAGTAATTAtcatctatttattatttaatgttttttattcattcattgttaaTGCATGTAGCATTTTAGTCTGGTTTGAACTTGATTGATTTGTGCAGCTGACATTTGAAACTCTTAGgattacaataaaacatttacttgAA

Function

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9088 Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space.

Ensembl:

ensembl_id ENSDART00000083654

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033008 lncRNA downstream 135204 49844884 ~ 49851884 (-) True XLOC_016871
TCONS_00033956 lncRNA downstream 193668 49792207 ~ 49793420 (-) True XLOC_016870
TCONS_00033005 lncRNA downstream 193771 49792207 ~ 49793317 (-) False XLOC_016870
TCONS_00033004 lncRNA downstream 194083 49792207 ~ 49793005 (-) False XLOC_016870
TCONS_00032999 lncRNA downstream 430524 49555790 ~ 49556564 (-) True XLOC_016866
TCONS_00033013 lncRNA upstream 51805 50104811 ~ 50106618 (-) False XLOC_016875
TCONS_00033015 lncRNA upstream 55300 50108306 ~ 50113861 (-) True XLOC_016875
TCONS_00033021 lncRNA upstream 201249 50254255 ~ 50272025 (-) True XLOC_016878
TCONS_00033957 lncRNA upstream 721403 50774409 ~ 50790581 (-) False XLOC_016884
TCONS_00033958 lncRNA upstream 737087 50790093 ~ 50790598 (-) True XLOC_016884
TCONS_00033010 mRNA downstream 1737 49984159 ~ 49985351 (-) True XLOC_016873
TCONS_00033009 mRNA downstream 8861 49884696 ~ 49978227 (-) True XLOC_016872
TCONS_00033006 mRNA downstream 126365 49844630 ~ 49860723 (-) False XLOC_016871
TCONS_00033007 mRNA downstream 132656 49844734 ~ 49854432 (-) False XLOC_016871
TCONS_00033001 mRNA downstream 359985 49612868 ~ 49627103 (-) True XLOC_016867
TCONS_00033014 mRNA upstream 51805 50104811 ~ 50126337 (-) False XLOC_016875
TCONS_00033017 mRNA upstream 80588 50133594 ~ 50198328 (-) False XLOC_016876
TCONS_00033016 mRNA upstream 80588 50133594 ~ 50198328 (-) True XLOC_016876
TCONS_00033018 mRNA upstream 146732 50199738 ~ 50225495 (-) False XLOC_016877
TCONS_00033019 mRNA upstream 164942 50217948 ~ 50225411 (-) True XLOC_016877
TCONS_00033003 other downstream 217536 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033002 other downstream 320039 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00032992 other downstream 1240276 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00032991 other downstream 1422142 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 1580883 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00033024 other upstream 420420 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 656360 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033049 other upstream 1362497 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033050 other upstream 1376167 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033052 other upstream 1405107 51458113 ~ 51458228 (-) True XLOC_016905

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000073_00591004_00626411.mRNA True 3503 mRNA 0.49 24 CI01000073 591004 ~ 627181 (+)