Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00033019 |
| length | 712 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 5 |
| gene id | XLOC_016877 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 50199738 ~ 50225495 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:1902969 | mitotic DNA replication | biological_process |
| GO:0000727 | double-strand break repair via break-induced replication | biological_process |
| GO:0006260 | DNA replication | biological_process |
| GO:0006267 | pre-replicative complex assembly involved in nuclear cell cycle DNA replication | biological_process |
| GO:0006268 | DNA unwinding involved in DNA replication | biological_process |
| GO:0006270 | DNA replication initiation | biological_process |
| GO:0042555 | MCM complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003678 | DNA helicase activity | molecular_function |
| GO:0003688 | DNA replication origin binding | molecular_function |
| GO:0003697 | single-stranded DNA binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:1990518 | single-stranded 3'-5' DNA helicase activity | molecular_function |
| GO:0004386 | helicase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050913-141 | Predicted to enable single-stranded DNA binding activity. Predicted to contribute to single-stranded 3'-5' DNA helicase activity. Predicted to be involved in DNA-dependent DNA replication and double-strand break repair via break-induced replication. Predicted to act upstream of or within DNA duplex unwinding and DNA replication initiation. Predicted to be part of MCM complex. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000147117 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033015 | lncRNA | downstream | 104087 | 50108306 ~ 50113861 (-) | True | XLOC_016875 |
| TCONS_00033013 | lncRNA | downstream | 111330 | 50104811 ~ 50106618 (-) | False | XLOC_016875 |
| TCONS_00033008 | lncRNA | downstream | 366064 | 49844884 ~ 49851884 (-) | True | XLOC_016871 |
| TCONS_00033956 | lncRNA | downstream | 424528 | 49792207 ~ 49793420 (-) | True | XLOC_016870 |
| TCONS_00033005 | lncRNA | downstream | 424631 | 49792207 ~ 49793317 (-) | False | XLOC_016870 |
| TCONS_00033021 | lncRNA | upstream | 28844 | 50254255 ~ 50272025 (-) | True | XLOC_016878 |
| TCONS_00033957 | lncRNA | upstream | 548998 | 50774409 ~ 50790581 (-) | False | XLOC_016884 |
| TCONS_00033958 | lncRNA | upstream | 564682 | 50790093 ~ 50790598 (-) | True | XLOC_016884 |
| TCONS_00033959 | lncRNA | upstream | 950586 | 51175997 ~ 51189707 (-) | False | XLOC_016890 |
| TCONS_00033960 | lncRNA | upstream | 950586 | 51175997 ~ 51207447 (-) | True | XLOC_016890 |
| TCONS_00033017 | mRNA | downstream | 19620 | 50133594 ~ 50198328 (-) | False | XLOC_016876 |
| TCONS_00033016 | mRNA | downstream | 19620 | 50133594 ~ 50198328 (-) | True | XLOC_016876 |
| TCONS_00033014 | mRNA | downstream | 91611 | 50104811 ~ 50126337 (-) | False | XLOC_016875 |
| TCONS_00033011 | mRNA | downstream | 164942 | 49987088 ~ 50053006 (-) | False | XLOC_016874 |
| TCONS_00033020 | mRNA | upstream | 3772 | 50229183 ~ 50272077 (-) | False | XLOC_016878 |
| TCONS_00033022 | mRNA | upstream | 51344 | 50276755 ~ 50298337 (-) | False | XLOC_016879 |
| TCONS_00033023 | mRNA | upstream | 53105 | 50278516 ~ 50372467 (-) | True | XLOC_016879 |
| TCONS_00033025 | mRNA | upstream | 481028 | 50706439 ~ 50707494 (-) | True | XLOC_016881 |
| TCONS_00033027 | mRNA | upstream | 492701 | 50718112 ~ 50719170 (-) | True | XLOC_016883 |
| TCONS_00033003 | other | downstream | 448396 | 49767578 ~ 49769552 (-) | True | XLOC_016869 |
| TCONS_00033002 | other | downstream | 550899 | 49666756 ~ 49667049 (-) | True | XLOC_016868 |
| TCONS_00032992 | other | downstream | 1471136 | 48746683 ~ 48746812 (-) | True | XLOC_016857 |
| TCONS_00032991 | other | downstream | 1653002 | 48564830 ~ 48564946 (-) | True | XLOC_016852 |
| TCONS_00032983 | other | downstream | 1811743 | 48405272 ~ 48406205 (-) | True | XLOC_016843 |
| TCONS_00033024 | other | upstream | 248015 | 50473426 ~ 50473542 (-) | True | XLOC_016880 |
| TCONS_00033026 | other | upstream | 483955 | 50709366 ~ 50709482 (-) | True | XLOC_016882 |
| TCONS_00033049 | other | upstream | 1190092 | 51415503 ~ 51415811 (-) | True | XLOC_016902 |
| TCONS_00033050 | other | upstream | 1203762 | 51429173 ~ 51429490 (-) | True | XLOC_016903 |
| TCONS_00033052 | other | upstream | 1232702 | 51458113 ~ 51458228 (-) | True | XLOC_016905 |
