RNA id: TCONS_00033955


Basic Information

Item Value
RNA id TCONS_00033955
length 585
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_016865
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49521249 ~ 49522277 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATCCTTCATAATAACAGGGCGGCAGCTGCGCTTTCGGGCTCCCGGTGCGCGGACTCGGGGGCGCCGCTGCCATGTCTCGAGCTCTGCCCGGTGCTCactcacatccacacacacacatatacacacacagggaCAATAGAGCCGCTGGATGATAGTCGACACGCCTTCTTTAGCCTAGAGATGGAAGGCACTGGATATATATGCGTGATTAATCTCGTCACTGACACGCACTCACAGGCACAACACACGCCTTCACGCTCAATATGGCATCTGTGATTACATTAAGACCCGCCGGCGAGGGAAATTGCTCCTTTATTATGCTGGATTGTGACCATCTTTTAAAAGCGTTTGGATCAGGTTTGGATGTGGTTAaaaactgtaggcctacattgtggacactgagtggagcctgctgcagctgctgtaCAGTCTCTACAGCCCACAGAACTTCATAATCTGCTCCAACAACACGATTTGTGCTTGCAGAGTTTATAACTATCTGCACTTTGTTTTGCTTCTTCATCGTTTGTGATTATTGATTTATAATAACAAAAGTTTCAGGAACTgaaatggaaataaagca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033954 lncRNA downstream 66796 49446787 ~ 49454453 (-) True XLOC_016864
TCONS_00033953 lncRNA downstream 173045 49341587 ~ 49348204 (-) True XLOC_016862
TCONS_00033952 lncRNA downstream 777255 48739542 ~ 48743994 (-) True XLOC_016856
TCONS_00033413 lncRNA downstream 788721 48731479 ~ 48732528 (-) True XLOC_016855
TCONS_00033412 lncRNA downstream 789105 48731479 ~ 48732144 (-) False XLOC_016855
TCONS_00032999 lncRNA upstream 33513 49555790 ~ 49556564 (-) True XLOC_016866
TCONS_00033004 lncRNA upstream 269930 49792207 ~ 49793005 (-) False XLOC_016870
TCONS_00033005 lncRNA upstream 269930 49792207 ~ 49793317 (-) False XLOC_016870
TCONS_00033956 lncRNA upstream 269930 49792207 ~ 49793420 (-) True XLOC_016870
TCONS_00033008 lncRNA upstream 322607 49844884 ~ 49851884 (-) True XLOC_016871
TCONS_00032997 mRNA downstream 151207 49366684 ~ 49370042 (-) True XLOC_016863
TCONS_00032996 mRNA downstream 489946 49007592 ~ 49031303 (-) True XLOC_016861
TCONS_00032995 mRNA downstream 554818 48950787 ~ 48966431 (-) True XLOC_016860
TCONS_00032994 mRNA downstream 694542 48817958 ~ 48826707 (-) True XLOC_016859
TCONS_00032993 mRNA downstream 767376 48748254 ~ 48753873 (-) True XLOC_016858
TCONS_00032998 mRNA upstream 33491 49555768 ~ 49557932 (-) False XLOC_016866
TCONS_00033000 mRNA upstream 86519 49608796 ~ 49627099 (-) False XLOC_016867
TCONS_00033001 mRNA upstream 90591 49612868 ~ 49627103 (-) True XLOC_016867
TCONS_00033006 mRNA upstream 322353 49844630 ~ 49860723 (-) False XLOC_016871
TCONS_00033007 mRNA upstream 322457 49844734 ~ 49854432 (-) False XLOC_016871
TCONS_00032992 other downstream 774437 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00032991 other downstream 956303 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 1115044 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032976 other downstream 1364012 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032964 other downstream 1668165 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00033002 other upstream 144479 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 245301 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033024 other upstream 951149 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 1187089 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033049 other upstream 1893226 51415503 ~ 51415811 (-) True XLOC_016902

Expression Profile

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