RNA id: TCONS_00032996


Basic Information

Item Value
RNA id TCONS_00032996
length 1930
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_016861
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49007592 ~ 49031303 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTAATGCTGGAGATGAAGTCTCTACAGGAGGAACCAGTGGAGGGATTCAAGATCACTTTAGTGGATGAAGCTGATCTCTACAATTGGGAAGTGGCGATTTTCGGACCCCCAAACACTCACTATGAAGGGGGCTATTTCAAGGCTCGTATTAAGTTCCCAGTCGATTACCCCTACTCCCCACCCACATTCAGATTCCTCACCAAGATGTGGCACCCCAACATCTATGAGAACGGGGACGTGTGCATCTCCATCCTGCATCCTCCAGTAGATGATCCACAGAGCGGAGAGCTGCCCTCGGAGAGGTGGAACCCCACACAGAACGTCAGAACCATCCTGTTGAGTGTCATCTCCCTACTGAACGAACCCAACACATTTTCTCCTGCCAACGTGGACGCCTCTGTCATGTACCGCAAATGGAGAGACAGTAAAGGAAAAGACCGGGAATATGCAGAAATCATTAGAAAACAAGTTCTGGCAACTAAAGCGGAGGCCGAGCGGGACGGAGTGAAAGTTCCCACCACGCTGGCTGAGTACTGTGTGCGCACACGTGCCCCTGCGCCAGATGAGGGCTCTGACCTCTTATACGACGATTACTATGATGACGAGGACTTGGACGATGAGAATGATGAGGACTGCTGCTATGATGAGGACGACTCAGGAAACGAAGAATCATGACCACATTCCCATTGCCGCCTTCATCCTCGTCTTCATCAGCATCAACCCCCCCGAAAGTGGAAACGTTAAGGCATGCAAACCTGCATTTACACTCACTCAAATGGCCATTTTTGTTTCCTTAAGGGACTAAAATGagatctttttttgtttgtttctgattATGTTTTTTATGTAAGCATTATTTTGTTTCACCTCAGAAATGCGCTGGCCTTCAGGCTCTTTTCCGTTCTGCTCTTTTATTCTTTAGTTGCTTCGTGCTTTCAGACAGCTTTGAAAAGAAGAAAAGCTAAAACAAATGAGTGCGACTTTTGAATTAAGGTTGACTAAGTGAGGCTTTGTGCTGAGTAACACTGATTATGAATTTCTTCTGATAACCACACTCACTTTTTGGCCTTCAAAGCACATTTGAGCAGCCCAGCAATCAAGTGTGACTTTGTCTTATTAGgtaagctttattttttaagtagAAATTCCAATGAGAAGCCCTAAGCATAAGATTAAAGTATGAAACCTTGATATTAATCCATCTGCTGAGGCCTAATTCTACAACGTGCTTAAATTCCACATTATTTATCTTATAGTATCACTTTAAATTATTGAAATGATGTATTTCTCTGTTCCAGCATATAGGAGCTTATCAGAAAATCGATATAATCAGATTTGGGCTGGATAATGTTTTGCTGTTGAgctgaatttattttaatattttcttttttttttaaagcaatgctGATATTCCCGTCTCGTCCTCTGTAAATCTTATTTAACTgtagtgagatttttttttttttttttcatttcgcaTCACTGAtcgtttgttgttttgtttgggaTGTAGCTCAAAAACTgttgaactatttttttttttttttgtggcgtTTCTTTTGCGTTAATGTTCTGTGAACCCACGGCACGTTCTTAGTTGTGAAAATTTCgattgaaacatttgttttttgcgCTGCCTGGAGGCTTGCAAGTGCTGGCGTCCGTCTCTGATTTCAGCTCATATCGACTGACTCTCAGGATCAACCAATCGGGAAAAAGAAAAATCTGCCAACAACATTGCGTACTTTTCTTTTTCCCCCCCGCATCTGCAAGTCATCCGTCtttatgatttttgttttaagGACAATTTACAACCGTATCCCAAGAGGCTGAGATCCACACGTGGAGCTGATTTGTCATTTTATTGACCTGTATGTATTTTTACGGTTTGTTGGCctatttaaaactgaataaagatcTTTATTAGA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-439 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Is expressed in central nervous system. Orthologous to human CDC34 (cell division cycle 34, ubiqiutin conjugating enzyme).

Ensembl:

ensembl_id ENSDART00000143471

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033952 lncRNA downstream 263598 48739542 ~ 48743994 (-) True XLOC_016856
TCONS_00033413 lncRNA downstream 275064 48731479 ~ 48732528 (-) True XLOC_016855
TCONS_00033412 lncRNA downstream 275448 48731479 ~ 48732144 (-) False XLOC_016855
TCONS_00033411 lncRNA downstream 292956 48711148 ~ 48714636 (-) True XLOC_016854
TCONS_00033951 lncRNA downstream 372012 48634551 ~ 48635580 (-) True XLOC_016853
TCONS_00033953 lncRNA upstream 310284 49341587 ~ 49348204 (-) True XLOC_016862
TCONS_00033954 lncRNA upstream 415484 49446787 ~ 49454453 (-) True XLOC_016864
TCONS_00033955 lncRNA upstream 489946 49521249 ~ 49522277 (-) True XLOC_016865
TCONS_00032999 lncRNA upstream 524487 49555790 ~ 49556564 (-) True XLOC_016866
TCONS_00033004 lncRNA upstream 760904 49792207 ~ 49793005 (-) False XLOC_016870
TCONS_00032995 mRNA downstream 41161 48950787 ~ 48966431 (-) True XLOC_016860
TCONS_00032994 mRNA downstream 180885 48817958 ~ 48826707 (-) True XLOC_016859
TCONS_00032993 mRNA downstream 253719 48748254 ~ 48753873 (-) True XLOC_016858
TCONS_00032990 mRNA downstream 446121 48545804 ~ 48561471 (-) True XLOC_016851
TCONS_00032989 mRNA downstream 467919 48519594 ~ 48539673 (-) True XLOC_016850
TCONS_00032997 mRNA upstream 335381 49366684 ~ 49370042 (-) True XLOC_016863
TCONS_00032998 mRNA upstream 524465 49555768 ~ 49557932 (-) False XLOC_016866
TCONS_00033000 mRNA upstream 577493 49608796 ~ 49627099 (-) False XLOC_016867
TCONS_00033001 mRNA upstream 581565 49612868 ~ 49627103 (-) True XLOC_016867
TCONS_00033006 mRNA upstream 813327 49844630 ~ 49860723 (-) False XLOC_016871
TCONS_00032992 other downstream 260780 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00032991 other downstream 442646 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 601387 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032976 other downstream 850355 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032964 other downstream 1154508 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00033002 other upstream 635453 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 736275 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033024 other upstream 1442123 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 1678063 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033049 other upstream 2384200 51415503 ~ 51415811 (-) True XLOC_016902

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000073_01099082_01112685.mRNA True 1421 mRNA 0.44 5 CI01000073 1098840 ~ 1113138 (+)