RNA id: TCONS_00032990


Basic Information

Item Value
RNA id TCONS_00032990
length 1915
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_016851
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48545804 ~ 48561471 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTACAATTGAGCTCCAGCAGACgcctcttgtaaaaaaaaaaaaaaaaaaagTGCAGAGAGGATCTGGAGTCATGCATGAGAGTCTGtttatgctgctgctgctgtcagGGCTTTTGAGGATGAATTCTGAGCTTTATCGTGATTACTACTTTATAAATATAAGAATGTCATGGCCAGAGGCTCAAAGTTACTGCAGAGCGAAGTACACTGATCTGGCTACGGCAGAGAGCACGGATGATGTAAACAGGCTGTTAAATTCAGTGGGTGCTCAATACAATGGATCGGTGTGGATTGGACTGAAGAGAGGGACACAGAAACGTTGGGGCTGGTCTTATGGAGATAACACAATCGCACAGTACGCTGCTTGGAGCAATGGAGAACCGTCGAGTACAAATGAATGTGGCTTCTTGGCTTACGGAAACTGGCGCACTTACAATTGCTCTGATCTGATTTACTTTGCATGCTACAATGGCACTGGATACACCATGTTAACTATGTGGATGAATTGGACCGATGCTCAAAGATACTGCAGAAAGCATTACATAGACCTACCCACCATCCACAACTCCACAGAACTGGCGCAGATAAACAGTGCTGTTTCCTACAATGCGTGGCTCTGGATTGGCCTGTTCAAGGACTCCTGGGAATGGTCTGACAAATGGGGCTGGTTCTTTAGATACTGGGCAGTAGGTCAACCATCCCCGAGTGCAGGATCTAGTGACTGTGTCGGCATGTCAACGACTAATTTTGGCAAATGGGCTTCATACAGCTGTGGCCTACAGCAGCCTTTTATCTGCTATGGAGGGACAAAGTTTCCTTACATCTACCAGTATGTGAATAAAAGCATGACGTGGCCAGATGCTCAGAGTTACTGCAGGGCGAGATTCACTGATCTGGCTACTGTAGACACCATGGATGATGTGAATCGTCTGGTAAATATAGTGGATCCTGGATTTAGTGGTTCAGTGTGGATAGGTCTCCAAAATGGAGGACAAAACCGCTGGATCTGGTCTTTGGGCAACGGCGTACTGTCCACCTACAGTTTCTGGAATCCAGGAGAACCGAGTGGAGATGGGGATTGTGGGAGCAGTACTTATGGAAACTGGTCTGATGAGAGCTGCAGCACTGTTCTCCCATTTTTATGTTTCGATGATCACACTGGATTTGCTATTATTAATACTGCTATGACATGGAGAGATGCCCAGAGCTACTGCAGACATTACCACACTGATCTGGCGACGATCGACAGTGTAGATCAGCAGCATATGATCAGTACTCAATCAACGCTCTGGATCGGCCTTTTCCTCGATTCTTGGGGATGGTCTGATCAGGATATTCTCAGTTTCAGATACTGGGCTCCTGATCAACCACCCCTCAGTTCAgtatctggtgactgtgctggcCTGTCAACAGCTGATTTTGGGCAATGGGCTCAATACAGCTGCAATTTACAGCAGAATTTTATCTGCTACGGAGATGACAGCTTAATTAATAAGCAGATTGTTCATATAAAATTGTCCTGTAAAGATAAATGCACACCGAATGACCCCACACTACAGACCGCCTTTCTAAATAAGATAAATGAGAAGCTGAGGAGCTTGGGACTGGAAAGAAAGAGCAAAATAAGCTGGAAACAGAGTGAAGATAAAGAGGTGTTTCATGAGGAGACTTACCCGCCAACTAATTATTGAACGTAAAGGCCAGCATTCATCTGTGTACCTCACTGACTTTGAAACCGATTTAAAGATTAAAAGTTGAAATATTAACTACATATAGGAGATAGAAAGTTGTATCAATTAAATAAGAACAAATTGAACTACAAATAGTTTTATTTCTAAGATTGAAACTCtcttaaatgttcatttttgtaacCTAAAATAACTACTAAAAAGGTCaataaaatccaaatgtga

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7910 No description available

Ensembl:

ensembl_id ENSDART00000123448

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033410 lncRNA downstream 122671 48418390 ~ 48423133 (-) True XLOC_016845
TCONS_00033949 lncRNA downstream 139601 48405044 ~ 48406203 (-) False XLOC_016843
TCONS_00033948 lncRNA downstream 150280 48394943 ~ 48395524 (-) False XLOC_016842
TCONS_00033409 lncRNA downstream 270261 48267344 ~ 48275543 (-) False XLOC_016839
TCONS_00033950 lncRNA upstream 73080 48634551 ~ 48635576 (-) False XLOC_016853
TCONS_00033951 lncRNA upstream 73080 48634551 ~ 48635580 (-) True XLOC_016853
TCONS_00033411 lncRNA upstream 149677 48711148 ~ 48714636 (-) True XLOC_016854
TCONS_00033412 lncRNA upstream 170008 48731479 ~ 48732144 (-) False XLOC_016855
TCONS_00033413 lncRNA upstream 170008 48731479 ~ 48732528 (-) True XLOC_016855
TCONS_00032989 mRNA downstream 6131 48519594 ~ 48539673 (-) True XLOC_016850
TCONS_00032987 mRNA downstream 33354 48478399 ~ 48512450 (-) True XLOC_016848
TCONS_00032988 mRNA downstream 48629 48496207 ~ 48497175 (-) True XLOC_016849
TCONS_00032986 mRNA downstream 82125 48458703 ~ 48463679 (-) True XLOC_016847
TCONS_00032985 mRNA downstream 97579 48447353 ~ 48448225 (-) True XLOC_016846
TCONS_00032993 mRNA upstream 186783 48748254 ~ 48753873 (-) True XLOC_016858
TCONS_00032994 mRNA upstream 256487 48817958 ~ 48826707 (-) True XLOC_016859
TCONS_00032995 mRNA upstream 389316 48950787 ~ 48966431 (-) True XLOC_016860
TCONS_00032996 mRNA upstream 446121 49007592 ~ 49031303 (-) True XLOC_016861
TCONS_00032997 mRNA upstream 805213 49366684 ~ 49370042 (-) True XLOC_016863
TCONS_00032983 other downstream 139599 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032976 other downstream 388567 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032964 other downstream 692720 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00032961 other downstream 1000165 47541737 ~ 47545639 (-) True XLOC_016826
TCONS_00032960 other downstream 1080968 47432087 ~ 47464836 (-) True XLOC_016825
TCONS_00032991 other upstream 3359 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032992 other upstream 185212 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00033002 other upstream 1105285 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 1206107 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033024 other upstream 1911955 50473426 ~ 50473542 (-) True XLOC_016880

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000118_00647533_00651638.mRNA True 2957 mRNA 0.39 7 CI01000118 646888 ~ 652303 (-)