RNA id: CI01000118_00647533_00651638.mRNA


Basic Information

Item Value
RNA id CI01000118_00647533_00651638.mRNA
length 2957
RNA type mRNA
GC content 0.39
exon number 7
gene id CI01000118_00647533_00651638
representative True

Chromosome Information

Item Value
chromosome id CI01000118
NCBI id null
chromosome length 793180
location 646888 ~ 652303 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTGATTCAGTGTCAAAACATCTTCAGGATGAGGCTTTGGTACATTAAGTTTTGACTAGAAATGTGATACAAAGTGGAAAAACATCTTCAATGAAAATTAGCTACAGTATTTGAATATGAAAATTACTTTTCTTGTCATCACAAAAATCAGCATACGGTATTGTGTTTACCTGTTTGTGTTGGGAAAAACATTGGATGATCCATTGTTCTAAACTAGACTTTTGCTTTCAGAGAATATAACGTTATAGTGCGGACTGAACCTTTACATCTCATTCTGATGTTTAAATTTTAACAGAAGTAAATCTGTGTTCCTATAGAGAAAACAGTACTTCAACCTAGTACTTTGTAAACACAACTATGTTTCTGAAGACTACAGTAGATCTTACTAGACCAGTTTTGTCTGCCAAATTACAGTGAGTGTGAAATGCTGTCTGATGTTGAGGCTATAGGAAATGTGTAAAATTCTGTGAATGAAGGCTGTAGTTTTTTCTGTAGCTGATTCTGTGCTTTCTGTGCTTTTGGGGTGCATTTCTTGACAAAGTATTTGAATTTGCATTGTACCTACATACATTTACTGTGACAAATGTATGTTTGATCATCTCATATTAGAATACAGCAGCACATAGTGGTGATAAACAGCAGAGTGGATCTGTGTGAGCAGTCATGGACGGAAGTCTGTTTGTGCTGCTGTTGCTGCTGCTGTCAGGGCTCTTGAGGACCACTTCTGGTGTTTATCGTCAGTACTACTATATAAATGCAAGAATGTCATGGCCAGAGGCTCAGAGTTACTGCAGAGCGAAGTACACTGACCTGGCTACTGTAGACACCATTGATGATGTGAACAGGCTGGTAAATATAGTGGATGCTGGATACAGTGGATCTGTGTGGATTGGATTGAAGAGAGGGACACAGAAACGCTGGGTTTGGTCTAATGGAGAAGACACACTAACACAGTACAGTGCCTGGGCTGATGGAGAACCGAAGAGTGGAAAAGAATGTGGCTACTTCAATAATGGAGTTTGGCTCAGTTCGTCATGCTCATCTCTGAATCACCTTGTGTGCTACAGTGGAAGCACTGGATACGTCAGGGTAGAGACATTCAAGAACTGGACAGATGCTCAGAGCTACTGCAGACAGCATCACATAGACCTACCCACTATTCACAATGCTCAGGAACTAAACCAGATAAAGAGTATTGTTCCATATTATTCTTGGGTCTGGATTGGTCTGTTCCTGGACTCTTGGGAATGGTCTGACAAATGGAGTCTCTTCTTTAGATACTGGGCAGTAGGTCAACCCTCCCAGAGTTCAGGATCTGGTGACTGTGTCAGCATGTCAAGAACCAATTCTGGGAAATGGGCTCAATACAGCTGTGATCTACAGCATCCTTTTATCTGCCATGGATGGCCCAAGTCTCCTTACCGCTCCTACCACTATGTGGATGAAAGCATGACATGGCAAGATGCTCAGAGTTACTGCAGAGCGAGATTCACTGATCTGGCCACTGCTGACACCATGAGCGACGTGAGTTTGCTGGTAAATACAGTGGATCCTGGATACAGTGGATCAGTATGGATAGGTCTCCACAATGGAACAGAGTATCGCTGGGTCTGGTCTATGGGCACACTGTCCCAGTACAGTATCTGGAATCCAGGAGAACCAAATGGTGATGGGGAGTGTGTGAGGAGTTTTAATGGAAACTGGTATGATGAGAGCTGCAGCACCGCTCTCCCGTTTGTGTGTTTCAATGACAGCTCTGGTTTTATCATCACTGAGACTGCTATGACATGGAGAGATGCTCAGAGTTACTGCAGACAACACCACACTGACTTGGCGAGCATCAGCAGCGCAGAGCAGCAGAATCTGATCAGTAATCAAGCATCGCTCTGGATTGGTCTGTTCCTGGACTCTTGGCAGTGGTCTGATCAGTGGAACCTCAGTTTCAGATACTGGGCAGCAGGTCAACCATCCCAGAGTTCAGGATCTGACTGTGTCAGCATGTCAAGAAACTATTCTGGGAAATGGGCTCATGAAAGCTGTGATCTAAAGCGTCCTTTTATCTGCCATGGAGAAGATGACAAGTTGATTAAAAAACAGATTGTCAGATTGAAATTGTCCTGTAATGGAAAATGCACATTGAATTATCCTTCCATACAGACTGCCATCCTGAATGAGATAAGTGAAAAGCTGAAGAGCATGGGGCTGGAAAGTGACAGCAAAATAAGCTGGAGAATAGGGGAAGGTGGAGAGGTGTTTCATCAGGAGATCAACCATATGGCCAATTCAAATAATAAATGTGATAGACTGTAATCGTCAATATACTTTAAAGTACATTTTAAAACAGATTCAAAGAATATAAAGTAAAAGTCTGAACGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTTTAAATCAGGAATGGACATTTTATATATTTTTTTTTTATTGGAATTTAATTAAATGGCAGTAACTACATATGACGTTAGCTTATAGTCAAATGGAACAAATAATTACATTCTTACAGGATTAAACTTTTCCTTCTAAATTTAGCTCTTAATACTCTGGTTTATACATGTAAATACATTTTGTAATAACATCTACAAATATGTTGGTTACACTTTATTTCAAGGTGTCCGTGTATAATTCTACATTTAAGTAATGGGTAATAATAATTTACTACTTACTATAGGGCTAGAGTTAGGATTGGGGTTGATTTATGGTTAGTTGCATGTAATTATGCAAAATTGTTATTACTACATGTAACGTGTAACAAGGACACTGTAAAATAAAGTGTTACCAATGTTTGTCTTTAAATTGACATTAAAAGTAAACTTCAATATAAAAACTTTCTAGTACTGTATAAGAAAAGAGGTGTTTGAGAGATATGTGAGCCTATTTGATATGTAAAGTATGCAGATTTCATTCTCCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382544 lncRNA downstream 5250 641357 ~ 641638 (-) True CI01000118_00642239_00643523
TU382515 lncRNA downstream 80646 566002 ~ 566242 (-) True G336345
TU382511 lncRNA downstream 86280 560308 ~ 560608 (-) True G336342
TU382445 lncRNA downstream 92391 552859 ~ 554497 (-) True G336287
TU382509 lncRNA downstream 130373 516233 ~ 516515 (-) True G336340
TU382548 lncRNA upstream 198 652501 ~ 653028 (-) True G336374
TU382549 lncRNA upstream 1236 653539 ~ 653776 (-) True G336375
TU382594 lncRNA upstream 74752 727055 ~ 727378 (-) True G336412
TU382568 lncRNA upstream 109013 761316 ~ 767440 (-) True G336391
CI01000118_00642239_00643523.mRNA mRNA downstream 2969 640885 ~ 643919 (-) False CI01000118_00642239_00643523
CI01000118_00618667_00629628.mRNA mRNA downstream 17098 618492 ~ 629790 (-) True CI01000118_00618667_00629628
CI01000118_00612526_00613448.mRNA mRNA downstream 32899 612372 ~ 613989 (-) True CI01000118_00612526_00613448
CI01000118_00592698_00593631.mRNA mRNA downstream 53083 592538 ~ 593805 (-) True CI01000118_00592698_00593631
CI01000118_00519523_00546014.mRNA mRNA downstream 99597 519137 ~ 547291 (-) True CI01000118_00519523_00546014

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032990 True 1915 mRNA 0.43 8 NC_007113.7 48545804 ~ 48561471 (-)