RNA id: TU382445


Basic Information

Item Value
RNA id TU382445
length 1513
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G336287
representative True

Chromosome Information

Item Value
chromosome id CI01000118
NCBI id null
chromosome length 793180
location 552859 ~ 554497 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATGTGATATGCATCTGTTCAGTCACATATATGTCAAATATGTATGTTTTATATGTATTAAACTTACGCGTTGCATAACTGTGTCAGTTAGGTCATCTCCGGTCAGTGCTCCACAGCAAAGCCCTATTTATCACTACAGTATTGTCCTCCTTGTTTACCTCAATGAAGAAAAGCCATATAACTGTTTTTAAATGCACCCTATTTACTGAGACTATGAAACTGCTATATATTTTGCTAAAAAGTGAACTCTTAGTTATGAAACAGCCTACTAGCCTCCTTTGTGATGGCAAGCCATTTTAACATTTATTTCTTAAAACTCAATAGTACATATTTTTGTTATTAGTATTTATTTTAATTTTTTTTAGTAATAAATCCAATAGTGAATAATACGTTTTTCAATTTCACTAGCAGCTATTCATTGTGTATTCAAAACTGACTAGTAGTCACTTAAAAAAAAAAAAAAAAAAAAAAGCCTTGTTGTAACAACTGGAATAGATACTAACATTTAGTAAATGTAAAAGTTTGTGTTTATTCAGTTTGTTATGGGATAACTAGCACATATTCTAGTAACTAATAAATATTTGATATTTCCTAATGAATAGTTATGTAAGGGATAAGTAATAGTTTCTTGTGAGTAAGTACCAGTGCCATTGAATAGTTACTAGTAAAATGTAAAAAGATACCAGTAACCATAAATTGGTAGTAATTAAAAAAGAGAAGTACTAGTAACAAAAATATACACTAGTTATAAAGAAATAATTGCTAAAGCAGCTTGCCACATGTTTCCCCTCCCAAAATGAATGAATCTCAACCTTTACTACTGTATGGGATGTGAGCATTATACGTCATTGCAGACTGTATATATAATTGTCACGGGTAGAGTCATGATGTTAGATAATGTCTTGCTGTCACACATGCCACTGATGCACACATAAGACTTATGCTTAAGACAATGAGGCACTCATTGCATAAGTTTTAGTTTACATTAATTGATTCATACACTTTAAATCAAATTTACTGCCAGTATGTGGTCATTTTAACTCTGAATACTGGAAACCTATAGTTATATCTCCTTGTGTTTTCCATGAAAGCAAGAATGTCGTATGGGATTAGAACAACATGAGTAAGTGAAGGCAGAAAAAATATTTTTGGTCAAGCTTTGTCTTTAAATTGATTTTAAACGGGTAAATATAGCCTGAAGTTGGCAGTTGTCCACTAATGTCGCAGTGTATGCTGGGTAGTTAAGCTTGAACTCAGATAGAGGTAGGCAGTGGGATGTTTGCAGGCTAACTGACCTACTCCTACAAGAGGTGCTCCAAATACCTTAATCTGCCTCTAATGTATCGAGCACAAACTCTGCATGTACATAAACTGTTTTTATAGCACTTTTTGTTTCAAAGCAGATTTATAGAAAATCATGGTTCATTTTTAAATATCTTAATATCTTCATCCTTATATCTTTCCTATGCTGTTTTTTCAGCACTTTTGTCTCCCTGGTTTTTGTTTAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382509 lncRNA downstream 36344 516233 ~ 516515 (-) True G336340
TU382507 lncRNA downstream 36663 514344 ~ 516196 (-) True G336338
TU382508 lncRNA downstream 38638 513818 ~ 514221 (-) True G336339
TU382500 lncRNA downstream 58058 494551 ~ 494801 (-) True G336336
TU382447 lncRNA downstream 171234 376195 ~ 381625 (-) True G336289
TU382511 lncRNA upstream 5811 560308 ~ 560608 (-) True G336342
TU382515 lncRNA upstream 11505 566002 ~ 566242 (-) True G336345
TU382544 lncRNA upstream 86860 641357 ~ 641638 (-) True CI01000118_00642239_00643523
TU382548 lncRNA upstream 98004 652501 ~ 653028 (-) True G336374
TU382549 lncRNA upstream 99042 653539 ~ 653776 (-) True G336375
CI01000118_00519523_00546014.mRNA mRNA downstream 5568 519137 ~ 547291 (-) True CI01000118_00519523_00546014
CI01000118_00505922_00510970.mRNA mRNA downstream 41609 505922 ~ 511250 (-) True CI01000118_00505922_00510970
CI01000118_00445906_00468559.mRNA mRNA downstream 84300 445706 ~ 468559 (-) True CI01000118_00445906_00468559
CI01000118_00433170_00435083.mRNA mRNA downstream 116618 432291 ~ 436241 (-) True CI01000118_00433170_00435083
CI01000118_00396458_00422127.mRNA mRNA downstream 130732 396317 ~ 422127 (-) True CI01000118_00396458_00422127
CI01000118_00592698_00593631.mRNA mRNA upstream 38041 592538 ~ 593805 (-) True CI01000118_00592698_00593631
CI01000118_00612526_00613448.mRNA mRNA upstream 57875 612372 ~ 613989 (-) True CI01000118_00612526_00613448
CI01000118_00618667_00629628.mRNA mRNA upstream 63995 618492 ~ 629790 (-) True CI01000118_00618667_00629628
CI01000118_00642239_00643523.mRNA mRNA upstream 86388 640885 ~ 643919 (-) False CI01000118_00642239_00643523
CI01000118_00647533_00651638.mRNA mRNA upstream 92391 646888 ~ 652303 (-) True CI01000118_00647533_00651638

Expression Profile