CI01000118_00519523_00546014 (PER2)


Basic Information

Item Value
gene id CI01000118_00519523_00546014
gene name PER2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000118
NCBI id null
chromosome length 793180
location 519137 ~ 547291 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000118_00519523_00546014.mRNA
AGTCATGCATGGTAAATCTAGTCAGGTCTTGGTCACAGGTAATCCACTAACATACTCTACTCTCTGGCAATACTACAGGTGTATTTTTAGCCCTTGGGTAAAAGACTTGTGAGTCGTGAATCAGTCTTGAAGGTGTCTTTCCTTAATATGGTCTATCTCAGGTCCTGACCAGTAAAAATTGGCTCAGTCTTCTCTACTCTGGTCAGACGACTATTTATTTCTTTAGAGCAAAGGGATAAGAGTTTATTTTTTCCCCTGTCATTTTCATGGCAACATGAAGGGATAAAAACCAGTCAGGGCCTGTTGTTGGTCTAGACAGCTGTCTAACACCTTTAATGTGCACTTGCTGGGATTAATCCTTTGAAGGAGGCAGTGTTTACAAGCTGAAATGCCACATCTGTTTGGTTAAAGGACACAGTACAGACACAACGAGGGGACTCCAGGGTTGCCCACCTTTGAACACTAAGTTTAGGCTCTTTGGGTCCAGACAGAGGCCGACCTGTCTATAGATTGTACCACAGGAGTCGATCAGACAGGGTTTTGCGTGCTTCACTTTGATGTACCATCTGGCTTTGTGATGAACAGTCATGAATTTGACTTGTTCAACTTCTGCTGTTATATAGGGGAAGATCGTGCAACTAAAGACACGATTGTATCTCCTGTATAGTGATAGCGTGCAGATTGTCTCTGTCCCATCTTGCCCTGGTTTCTTTTGATATGCTTAAGTGCATCATCCTGTTCCTTTGCCTAAAGGGGCATTTACACTACACTTTTCGTTCCATTGACCTCTATTCATAAGTATGCGAATGCAGAAGACAGGAAATGCAAGCTGCATTACAAAGTTCAGTGTATTCGGACCTGCAAACTCATATCACGTGAAGACATGTGACCAATAAAAGATTGATACGCCACAGCATGACCTTTCATCTGAACTAAAAGAATGCAAACTTTAATTGCAGCATTTCAGTAAAGTGGAGTAGATTTCATATAATTATATTTTTGATGTGTTATATGTTGAATTATGTTTTTTAAAACATGACATCATTTTGCGACCATTGCAATGTCCGTAAAAATTTTGCGTACTCAAAGTCTAGTTTGACCATGGTTTATGGACAAGATTTCCTGGCGTTTTCAGATGAATAATAATGACTCATGTTCTGTCTGTTTTTTTTATTCCCATAGCAAACCGTGTGCTCATCAGAATTCCCACTTAAAGCCCCACCATGAAGATGGGTTGATCTGATTGCACCTTGCTTCACTTCTTCAAACCCAGTCCGATGTCCGAGGACTCAGATTCCAAACCGTACCTGTTCTCCTCCCTTGAGGGACAGAGCGAGGCAGCCGGCTGCAGTTCAATGGCGACATTGCATCGGATGGGCAGTTTCGCGGAGGGGGCCGAACTTGGCCTGGCATCCGAAGGAAGTGACAGTAGCCAAGACCCTCCCGCCTCGCCCCATAACAACCGGAAGATGACACGTTCCCTCCATGAGGATGTGGATATGAAGAGTAGCGGGTCCAGTGGGAGTGGAACAGAGTCCCATGGTAACGAGTCCCACGGTAATGATTCCCATGGAAACGAGTCCCATGGCAATGAGTCTTCTGGGAGTTCCAATAGCCGAAGCAAAGACTCTGCACTATTAGAGTCATCGGGGAGTAACAAAAGCTCCAACTCTCACAGTCCCTCACCACCCAGCAGCACAAACGCCTTCAGCCTTCTGAGTGCCAGCTCAGAGCAAGACAACCCGTCTACCAGCGGCTGCAGTAGCGAAGAGTCTGCCAAGGCAAAGACGCAAAAAGAGTTGCTCAAAACTCTGAAGGAGCTGAAGCTTCATTTGCCGCCAGAGAAGCGGAACAAGGGCAGCAAGTCAACAACGCTCAACACTCTGAAATATGCCCTCCGCTGCGTCAGACAGGTGGAGGCAAATGAAGAATACTATCAGCTGCTTATGATTAATGACAGTCAGCCATCAGGGCTTGACGTCTCATCATATACCATAGAGGAGATAGACAGCATCACCTCTGAATACACCCTCAAAAACACTGATATCTTTGCAGTGGCAGTGTCCCTCATCACTGGGAAGATCGTCTACATTTCAGACCAGGCCGCCTCCATCTTGAACTGCAAACGGGATGTGTTCAAGAATGCTAAGTTTGTGGAGTTTCTTACACCGCAGGACGTTAGCGTGTTTTATAGCTTCACCACACCGTACAGACTGCCGTCCTGGAGCATGTGCACTGGTGCAGAGTCGTCACCGTCAGACTGCATGCAGGAGAAATCCTTCTTCTGTCGTATTAGTGGTGGTAAAGAGTGTGAAGGAGATCTTCAGTACTATCCCTTCAGAATGACTCCTTATCTGATGAAGGTGCAGGATACAGAGCACTCTGAAGATCAGTTTTGCTGCCTCCTGCTGGCCGAGAGAGTGCACTCCGGCTATGAAGCTCCCAGGATCCCCACGGACAAACGAATCTTCACCACAACACACACACCCAGCTGTGTGTTTCAGGATGTGGATGAGAGGGCTGTTCCATTACTAGGATATCTACCACAGGATTTGATTGGCACACCTATCCTTCTGCACCTGCATCCCAGTGATCGATCAAGCATGCTCGGCATCCACAGGAAGATCCTGCAGTATGTTGGCCAGCCGTTTGATCACTCGATCCGCTTCTGTGCTCGTAATGGAGAGTACATCACCATAGACACCAGTTGGTCCAGCTTTGTCAATCCTTGGAGCCGCAAAGTGTCTTTCGTCATCGGCAGACACAAAGTTCGCATGGGTCCAGTGAATGAAGATGTGTTTGCAGCTCCAGCCACAGCTGAGGGCAAATGCATCGACTCAGACATCCAGGAAATCACTGAGCAAATTCACCGACTCCTGGTGCAGCCGGTGCACAACAACGGCTCTAGTGGCTATGGGAGTCTGGGCAGTAACGATCACCTGATGAGTGTGGCGTCGTCTAGTGAAAGTAACGGTAACATAACACGTCAGCGACAAGAGGAAGAGGATGGCAGTAGAGCCAAGCCGAGGAGCTTTCAGGAGATTTGCAAAGGAGTTCACATGCAGAAAAACCAAGAGCAGCAGTTGAAGAAGAGCCCTTCAAAGTTTGTACAGAAAAGTCCAGTGGTTCGACCCAAAGACTCAGCGTGTCTCGCCACCTGGAGAGAGTCTCCTGAGGAGCAGCGTGCCGCTGGGCAAGAGGAGCTGGCCTTCAAAGATCAGACCGTCTACTCCTATCAGCAGATTAGTTGCCTGGACAGCGTAATCAGATACTTGGAGAGCTGTAATGTGCCCATAACAGTGAAGAGAAAGTGCCAATCCTCCTCAAACACAACATCCTCAGACGAGGACAAGCAGAGAGGTGTGGAGAGCTCCATGCAAGTGTCTGAAGCAACAGGCCATCTAAAAGACCAACCAGGACTTTCGTCATTAGACGTCTCTAAGAAGCCTCCAGGCTCTGGTGTAGTGACTCCATCTCTGACCCCACTGCCGCTGCCCAGTAAACCTGAAAGCGTTGTGTCCATTACCAGCCAGTGCAGCTACAGCAGCACGATTGTACATGTGGGAGACAAGAAAGAGATCATTGAAGACGTCCCCAGCGCTGAAGGAACTGAAGGTCAGGGTCTCGCTGTCCCTCCGGCCGCACTCTCACCGCACAATCCAGAGCGAGAGGCTTACAAGAAACTGGGCCTGACCAAGCAGGTTCTGGCAGCACATACCCAGAAGGAAGAGCAGGCGTTCCTCAGCCGCTTCAGAGAGCTGCGAGGTGTGCATGCTTTTAAAGCCGACTGCTCCCTCTATCTGGAGAGACAGAAAGGACAAGTTGCATCTGAGGCTGTTCCTGCTCCTCGCTCATGTAAGCAAGGTGGTGGCGGTGCACCGGAGACCACTGGAACCCGCCGGGGTCGCAACAAGAAGACCAAGTCCAAGCGGATCAAGCCGAACGAGTCCTCTGACAGCACTCCTTCAGGCCGTAGGCCGACACCCAGACCTCAGTTACAGGGCCTCAACCAGACCTCCTGGTCTCCCTCGGACACATCCCAATCCACCTTCCCCATCGCCTATCCAGCTGTGATGCCTGCGTACCCACTGCAGATGTACCCGGGAGCCGGCGGCATGCAGCCCAGGGTGGATGCTCAGATCCCAGGCTTCGGGGAGACTCAGTGCAGCCAAGATCCACGCATCCCGATGCAGCCCATCCAGACGCCATACTCCGCTCCTCTGGTCACCCCCATGGTGGCGCTTGTACTGCCCAATTACATGTTCCCACAGATGGGCAGCCCTCCGCGGCAGCCATTCTACCCCAAGGAGGGAAGTTTCCCTGCGCAGCCTTCCTTTCAACCTCAGCCTAGTTTCACCACACAGGCAACATTCCCTCCGCAGTCAACCTTTACCATACAGACCCAGTTCACCTCCCAGAACCCCTTTACCCCACAGCCTCCATTTCAGCCACAGCCATTCCAGTTTGCTAGCCCTGAGGAACCCCCAAAACCACCCGAGCCTGAGCTGAGGGAGGAGCTTTTGCGAACCCCCACCCCACAGTCCATAGGAGGAAGCAGCCCACCCTCACCGCCTTTGTTCCAGTCACGCTGCAGCTCGCCTTTGCAGCTCAACCTGCTGCAGTTAGAGGAGACCCAACGCTCTGCTGAGAGGCAGGAGAGCACGGCGCCATCTGTTGTACCGCAGGGCAACTGCAGCAGTAGTGTGGAGAAAGCAGGGCGTGCAATCGGGCAAACCAAAACTGACAAAGTTAAGCTACAGGTTGGGACTCTTTTTCTCGCTTTCTTTGACTTACAAGTACCATCATATTACAGTGCATTTTTGTACATGGATGAAGGGTCACCTGTCGATGGTCAACATAGCGATGAGTTCTCATCATCTAGTGATATGCTGGACATTCTCCCAGAGGACTCGCGCTCCGGCACCGGCTCTGCCACCTCAGGCTCCATGGGCTCTGGTTCGAACGGCTGTGGAACGTCTGCCAGTGGCGGATCTGCCAGTAGAACTGGAAGCAGCAACACAAGCAACAACAGCAGTAACTACTTCGGCAGTGTGGATTCCTCCCAGAAGTCCCGTAAGGCCAAGGGGCAAGGCTCTGTTGCGCTGGAGCTGGATAAGAGTGAGAACCTGATCAAGTATGTACTGCAGGACCCACCGTGGCTGCTCATGGCTAACGTAGACGAAGATGTTATGATGTCATACCAGTTACCATCTCGTGACATCCAGAAGGTTCTGAGGGAGGACAGGGAGAAGTTGCGGCAGATGCAGAAAAGTCAGCCGCGCTTTACAGAAGATCAGAAGAGAGAGCTGGCGGAAGTGCATCCCTGGATGAGAAGAGGCGGACTGCCCAAAGCCATCGACGTCAAGGCGTGTGTCAGCTGTGAAGAGGTCAGTGAAACCCTGACAGAGGAGGATCCACCAGATCTGCACATGGGGGAATCAGAAACCAATGATGTCACCGCACCTCCGGCCAATAGCTGTGAAGATTCACACTCAAAAGCACATGGCTGTCCAGGTCCTGTCACCTAAACCAGACCTCTTTTCCACATGTAAAATCACAGACCTCATCTGATTGGACAATGCGGACATTTTAGCATCGAGAAAATGCTTCTGCCGCAGCCACAGACCTTCACGAAGACTCGTTCTGGTTGCTAGTTTGTGTGAGTGTGTACAGATGTGTAAATACATGAGTGAGTGAGTGAGTGAGTGTGAGAGCATATCAAAGTCAACAGATTATTTCCAGACAGTCTGAACTGTCTTTAGAGCCAGACTCTGTGCTGTACAGTGACCATTACTGTTGGACTTTAATATTAAGGAATAATATTTCCTTTTCAGTGTTTCCCTGGCAGTTTTTCCTTGTGTGTATATATACAAACTAACTTATTTTCTTCTTTGCGACTTTCTTTTTCTATAAA

Function

symbol description
per2 Enables chromatin binding activity. Acts upstream of or within several processes, including circadian regulation of gene expression; entrainment of circadian clock by photoperiod; and locomotor rhythm. Predicted to be active in cytoplasm and nucleus. Is expressed in heart; liver; muscle; nervous system; and ovary. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome and advanced sleep phase syndrome 1. Orthologous to human PER2 (period circadian regulator 2).

GO:

id name namespace
GO:0042753 positive regulation of circadian rhythm biological_process

KEGG:

id description
K02633 PER2; period circadian protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000118_00519523_00546014.mRNA True 5914 mRNA 0.50 22 519137 547291

Neighbor

gene id symbol gene type direction distance location
CI01000118_00505922_00510970 NA coding downstream 7887 505922 ~ 511250 (-)
CI01000118_00445906_00468559 GIGFY2, GIGYF2 coding downstream 50578 445706 ~ 468559 (-)
CI01000118_00433170_00435083 NA coding downstream 82896 432291 ~ 436241 (-)
CI01000118_00396458_00422127 PFKPB, PFKP coding downstream 97010 396317 ~ 422127 (-)
CI01000118_00336163_00337890 FZD8, FZD8B coding downstream 181045 335762 ~ 338092 (-)
CI01000118_00592698_00593631 NA coding upstream 45247 592538 ~ 593805 (-)
CI01000118_00612526_00613448 NA coding upstream 65081 612372 ~ 613989 (-)
CI01000118_00618667_00629628 NA coding upstream 71201 618492 ~ 629790 (-)
CI01000118_00642239_00643523 NA coding upstream 93594 640885 ~ 643919 (-)
CI01000118_00647533_00651638 NA coding upstream 99597 646888 ~ 652303 (-)
G336340 NA non-coding downstream 2622 516233 ~ 516515 (-)
G336338 NA non-coding downstream 2941 514344 ~ 516196 (-)
G336339 NA non-coding downstream 4916 513818 ~ 514221 (-)
G336336 NA non-coding downstream 24336 494551 ~ 494801 (-)
G336289 NA non-coding downstream 137512 376195 ~ 381625 (-)
G336287 NA non-coding upstream 5568 552859 ~ 554497 (-)
G336342 NA non-coding upstream 13017 560308 ~ 560608 (-)
G336345 NA non-coding upstream 18711 566002 ~ 566242 (-)
G336374 NA non-coding upstream 105210 652501 ~ 653028 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016841 per2 coding NC_007113.7 CM002886.2 48309600 ~ 48375342 (-)