RNA id: TU382509


Basic Information

Item Value
RNA id TU382509
length 283
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G336340
representative True

Chromosome Information

Item Value
chromosome id CI01000118
NCBI id null
chromosome length 793180
location 516233 ~ 516515 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGATCTGCAACTTTTAGAGCTAGTCATTCTGTGCAACACTAGTGTGGCTAATCCGTTATGGGTGTTAAGTTTTACACTTCTGAAGGCTCAAAATACCCAAAGCGGACATTCACACTTTCAGACATGTAGAGAAGGTGTGATATAACCAGAGTGTTACCTGTTTTTTTTTTTCATCAAAGCAACTGCAGCTGCCTAGAAACTCTATCTGCTCTTCGTCATTTCAAGAAAAGCTTCAAATTCGCGTTACTGTAATGGAAATTTCAAGACTTAACATGACACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382507 lncRNA downstream 37 514344 ~ 516196 (-) True G336338
TU382508 lncRNA downstream 2012 513818 ~ 514221 (-) True G336339
TU382500 lncRNA downstream 21432 494551 ~ 494801 (-) True G336336
TU382447 lncRNA downstream 134608 376195 ~ 381625 (-) True G336289
TU382481 lncRNA downstream 155800 360202 ~ 360433 (-) True G336317
TU382445 lncRNA upstream 36344 552859 ~ 554497 (-) True G336287
TU382511 lncRNA upstream 43793 560308 ~ 560608 (-) True G336342
TU382515 lncRNA upstream 49487 566002 ~ 566242 (-) True G336345
TU382544 lncRNA upstream 124842 641357 ~ 641638 (-) True CI01000118_00642239_00643523
TU382548 lncRNA upstream 135986 652501 ~ 653028 (-) True G336374
CI01000118_00505922_00510970.mRNA mRNA downstream 4983 505922 ~ 511250 (-) True CI01000118_00505922_00510970
CI01000118_00445906_00468559.mRNA mRNA downstream 47674 445706 ~ 468559 (-) True CI01000118_00445906_00468559
CI01000118_00433170_00435083.mRNA mRNA downstream 79992 432291 ~ 436241 (-) True CI01000118_00433170_00435083
CI01000118_00396458_00422127.mRNA mRNA downstream 94106 396317 ~ 422127 (-) True CI01000118_00396458_00422127
CI01000118_00336163_00337890.mRNA mRNA downstream 178141 335762 ~ 338092 (-) True CI01000118_00336163_00337890
CI01000118_00519523_00546014.mRNA mRNA upstream 2622 519137 ~ 547291 (-) True CI01000118_00519523_00546014
CI01000118_00592698_00593631.mRNA mRNA upstream 76023 592538 ~ 593805 (-) True CI01000118_00592698_00593631
CI01000118_00612526_00613448.mRNA mRNA upstream 95857 612372 ~ 613989 (-) True CI01000118_00612526_00613448
CI01000118_00618667_00629628.mRNA mRNA upstream 101977 618492 ~ 629790 (-) True CI01000118_00618667_00629628
CI01000118_00642239_00643523.mRNA mRNA upstream 124370 640885 ~ 643919 (-) False CI01000118_00642239_00643523

Expression Profile