RNA id: TCONS_00033407


Basic Information

Item Value
RNA id TCONS_00033407
length 1011
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_016819
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47090745 ~ 47099661 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cccaaactttggaCCGGTAGTTTAtacacttgattttaaaatatcaaaaaacatgcaaaaacatcaaaacataaatttgcattaaaataaCCATTTTTTCCCACATTGTTggttataaaaaacatttatcaaGTTCTAGACTTGAATTATTTCCAGGCCTCTAAAACCACATTGTTGTGTAAATAGATAACCAGAAAACACAAGAAGTTGACATGTTTAGTTGAAAATGAAGTTGTGTAAACTCCTCCAGAAGTGCCCTTGAGTTGCTCTGCTGAATCAAGTAAACTCTTCAAAACCGCTGATGTGTTAATTTGGACTATTGATTCTTAGGTTAGCATGCGCACTGCAGCCATTGTGAGATTTAGGTTCCTCTTTTTCCAGGTGTTTCCCAGTCATTATAACTGTGTAGAACATTGACGTCTTTACCGCCACAGTAATATTTCTTTCAGTTTCCAAGTGAATTTCTAGCTGCTTTGTTGAATGCTGCCTGAGCAGAATCAGTGATGAACCTCCCATCAAACCTCTGATCCATCAGCTCCTTTGaaagattttgtgtttttttcagatGGTGACTGTATGTTGAATGCGTTTAGTGTGATGGATTTTTCTGGAAACCCTGCAGCGCTGCATCCAACGACTGCTGTTCTGCAGAATCGTGAACTGTGGCGTGGTGAAAGCAGGGGTTACGAATCGCTGAAGCCAGAGTCCGGAAACACCGGGCAAGATGGAGGAGCAGATAGGCAGAAGGAATCCCTGCTGGAGCAACCAGTCTCCCCCAGCAGCTCTGCGTTTCTCTTCCCgtatctctttctttctctccccGCCAGCTAAAGAATCCTTTCATCTTGGACTTGTCTCATTTTGCCTTTTCGCACTCTGGCTGACTGCAGTGTTAAATTTTTGTATTGCAAATGAGACTGTCACGCTTCGCAGATATGCAGGCAATTAGCAGCCAACACAGACTCTGTCTTTAAGGCTTTTCATGAAGTATTTGAAAGACAATGGGAACGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033406 lncRNA downstream 225183 46863035 ~ 46865562 (-) True XLOC_016817
TCONS_00033938 lncRNA downstream 1056634 46019361 ~ 46034111 (-) True XLOC_016816
TCONS_00033937 lncRNA downstream 1534081 45556180 ~ 45556664 (-) True XLOC_016811
TCONS_00033936 lncRNA downstream 1642454 45432582 ~ 45448291 (-) False XLOC_016809
TCONS_00033405 lncRNA downstream 1648563 45441007 ~ 45442182 (-) True XLOC_016809
TCONS_00033939 lncRNA upstream 242110 47341771 ~ 47344826 (-) True XLOC_016821
TCONS_00033941 lncRNA upstream 257660 47357321 ~ 47367152 (-) False XLOC_016823
TCONS_00033940 lncRNA upstream 257660 47357321 ~ 47367152 (-) True XLOC_016823
TCONS_00033942 lncRNA upstream 886786 47986447 ~ 47988542 (-) False XLOC_016834
TCONS_00033943 lncRNA upstream 886786 47986447 ~ 47988542 (-) False XLOC_016834
TCONS_00032946 mRNA downstream 50983 47038403 ~ 47039762 (-) True XLOC_016818
TCONS_00032944 mRNA downstream 1399617 45666146 ~ 45691128 (-) True XLOC_016814
TCONS_00032938 mRNA downstream 1426800 45655294 ~ 45663945 (-) False XLOC_016813
TCONS_00032937 mRNA downstream 1459922 45629707 ~ 45630823 (-) True XLOC_016812
TCONS_00032934 mRNA downstream 1580041 45499613 ~ 45510704 (-) False XLOC_016810
TCONS_00032958 mRNA upstream 270662 47370323 ~ 47431205 (-) False XLOC_016824
TCONS_00032959 mRNA upstream 279605 47379266 ~ 47431205 (-) True XLOC_016824
TCONS_00032962 mRNA upstream 487577 47587238 ~ 47620806 (-) True XLOC_016827
TCONS_00032963 mRNA upstream 544380 47644041 ~ 47681454 (-) True XLOC_016828
TCONS_00032965 mRNA upstream 770146 47869807 ~ 47870649 (-) True XLOC_016830
TCONS_00032945 other downstream 1345766 45744863 ~ 45744979 (-) True XLOC_016815
TCONS_00032943 other downstream 1399673 45665493 ~ 45691072 (-) False XLOC_016814
TCONS_00032940 other downstream 1426831 45656236 ~ 45663914 (-) False XLOC_016813
TCONS_00032947 other upstream 160976 47260637 ~ 47260753 (-) True XLOC_016820
TCONS_00032948 other upstream 245380 47345041 ~ 47347297 (-) False XLOC_016822
TCONS_00032949 other upstream 245537 47345198 ~ 47348412 (-) False XLOC_016822
TCONS_00032950 other upstream 245543 47345204 ~ 47347917 (-) False XLOC_016822
TCONS_00032951 other upstream 245548 47345209 ~ 47348782 (-) False XLOC_016822

Expression Profile

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