RNA id: TCONS_00032946


Basic Information

Item Value
RNA id TCONS_00032946
length 1020
RNA type mRNA
GC content 0.36
exon number 2
gene id XLOC_016818
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47038403 ~ 47039762 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GccattttcaaaacaaaagccGCGGTTTTCAAGTTATGATGACGTttgttatacattatatttagttACACATTATACTTGGTTACAAAGCGTTGGTTAATTTAAGTTGACTTTTCTCGTTAGCAACACGCTAAAGTTTTGTTCACTCCGTCCGAGGGCAGCGTCtcatgaacagacagacagaaatgtcAGAGCTTGGTCTAGGACGAAAACGAAGAATTGACATCTGGTCAAACTTCACATATGACAACAAGGACAACAAGAGCGTCTGTAAACCATGTGGAGTAAAAATCGCTGGGAAAAACACCACCAACTTGAAGCGACATTTACAGACGGTTTATCCAGAAATCCACACCAAGATACAGAAGATGTCTGATGACCATGGGCCAGGTGGAAATAAAGCTAGTGATGCTACTAGTACAACACAGCAGCAGGCCATCTCAGATTTCCTAAGGTCTTCAAAGTACAAGACTGAATCAAAGGAACAACAGACCAAGGAGCAGGCCATAGCTAGATGGATAGGACGGACAGGTTTACCACACACAAAAATTGAGGATGAGGACTTTGTGCTAATGATGGGGATGATAGATGGGAGACTAACAGTTCCAAAGAAAACTAAAATTAgcaatttaattaaaacactgtatgaatgctgtactTTATCTTGAAAGAATGTCATATGCGTTTCATATAATTCAAGGACAATGCATATCTTTTTCAGGGAGCATGTATATTGTTCAGGGAGAGCAGGTCTTGTGgttattttttgtgaaaaagactCATGTTTCTgacatgtaataaacatttttttattacaacaatTAGATATGTGCCTGTATTCTATATATGCttccatatattatattatacttacaATTACATGAATTATGGAGAAAAATCTGCTAATATTTGGTCTACTAAAACTAGACTAAGACTAATAGACTTAAGACTAAACTAAGACTAAAACTCTTATGATATTTAGTCAACTAAACTAGACTAAGACTAAAAGATTTCAGATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139389

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033406 lncRNA downstream 172841 46863035 ~ 46865562 (-) True XLOC_016817
TCONS_00033938 lncRNA downstream 1004292 46019361 ~ 46034111 (-) True XLOC_016816
TCONS_00033937 lncRNA downstream 1481739 45556180 ~ 45556664 (-) True XLOC_016811
TCONS_00033936 lncRNA downstream 1590112 45432582 ~ 45448291 (-) False XLOC_016809
TCONS_00033405 lncRNA downstream 1596221 45441007 ~ 45442182 (-) True XLOC_016809
TCONS_00033407 lncRNA upstream 50983 47090745 ~ 47099661 (-) True XLOC_016819
TCONS_00033939 lncRNA upstream 302009 47341771 ~ 47344826 (-) True XLOC_016821
TCONS_00033941 lncRNA upstream 317559 47357321 ~ 47367152 (-) False XLOC_016823
TCONS_00033940 lncRNA upstream 317559 47357321 ~ 47367152 (-) True XLOC_016823
TCONS_00033942 lncRNA upstream 946685 47986447 ~ 47988542 (-) False XLOC_016834
TCONS_00032944 mRNA downstream 1347275 45666146 ~ 45691128 (-) True XLOC_016814
TCONS_00032938 mRNA downstream 1374458 45655294 ~ 45663945 (-) False XLOC_016813
TCONS_00032937 mRNA downstream 1407580 45629707 ~ 45630823 (-) True XLOC_016812
TCONS_00032934 mRNA downstream 1527699 45499613 ~ 45510704 (-) False XLOC_016810
TCONS_00032933 mRNA downstream 1528180 45491740 ~ 45510223 (-) False XLOC_016810
TCONS_00032958 mRNA upstream 330561 47370323 ~ 47431205 (-) False XLOC_016824
TCONS_00032959 mRNA upstream 339504 47379266 ~ 47431205 (-) True XLOC_016824
TCONS_00032962 mRNA upstream 547476 47587238 ~ 47620806 (-) True XLOC_016827
TCONS_00032963 mRNA upstream 604279 47644041 ~ 47681454 (-) True XLOC_016828
TCONS_00032965 mRNA upstream 830045 47869807 ~ 47870649 (-) True XLOC_016830
TCONS_00032945 other downstream 1293424 45744863 ~ 45744979 (-) True XLOC_016815
TCONS_00032943 other downstream 1347331 45665493 ~ 45691072 (-) False XLOC_016814
TCONS_00032940 other downstream 1374489 45656236 ~ 45663914 (-) False XLOC_016813
TCONS_00032941 other downstream 1374498 45659375 ~ 45663905 (-) False XLOC_016813
TCONS_00032942 other downstream 1374501 45659935 ~ 45663902 (-) True XLOC_016813
TCONS_00032947 other upstream 220875 47260637 ~ 47260753 (-) True XLOC_016820
TCONS_00032948 other upstream 305279 47345041 ~ 47347297 (-) False XLOC_016822
TCONS_00032949 other upstream 305436 47345198 ~ 47348412 (-) False XLOC_016822
TCONS_00032950 other upstream 305442 47345204 ~ 47347917 (-) False XLOC_016822
TCONS_00032951 other upstream 305447 47345209 ~ 47348782 (-) False XLOC_016822

Expression Profile

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