Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00032941 |
| length | 777 |
| RNA type | processed_transcript |
| GC content | 0.51 |
| exon number | 5 |
| gene id | XLOC_016813 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 45655294 ~ 45663945 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0071011 | precatalytic spliceosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040426-2878 | Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Orthologous to human PRPF38B (pre-mRNA processing factor 38B). |
| ensembl_id | ENSDART00000133598 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033937 | lncRNA | downstream | 102711 | 45556180 ~ 45556664 (-) | True | XLOC_016811 |
| TCONS_00033936 | lncRNA | downstream | 211084 | 45432582 ~ 45448291 (-) | False | XLOC_016809 |
| TCONS_00033405 | lncRNA | downstream | 217193 | 45441007 ~ 45442182 (-) | True | XLOC_016809 |
| TCONS_00033935 | lncRNA | downstream | 218464 | 45431839 ~ 45440911 (-) | False | XLOC_016809 |
| TCONS_00033938 | lncRNA | upstream | 355456 | 46019361 ~ 46034111 (-) | True | XLOC_016816 |
| TCONS_00033406 | lncRNA | upstream | 1199130 | 46863035 ~ 46865562 (-) | True | XLOC_016817 |
| TCONS_00033407 | lncRNA | upstream | 1426840 | 47090745 ~ 47099661 (-) | True | XLOC_016819 |
| TCONS_00033939 | lncRNA | upstream | 1677866 | 47341771 ~ 47344826 (-) | True | XLOC_016821 |
| TCONS_00033941 | lncRNA | upstream | 1693416 | 47357321 ~ 47367152 (-) | False | XLOC_016823 |
| TCONS_00032937 | mRNA | downstream | 28552 | 45629707 ~ 45630823 (-) | True | XLOC_016812 |
| TCONS_00032934 | mRNA | downstream | 148671 | 45499613 ~ 45510704 (-) | False | XLOC_016810 |
| TCONS_00032932 | mRNA | downstream | 148676 | 45491032 ~ 45510699 (-) | False | XLOC_016810 |
| TCONS_00032944 | mRNA | upstream | 2241 | 45666146 ~ 45691128 (-) | True | XLOC_016814 |
| TCONS_00032946 | mRNA | upstream | 1374498 | 47038403 ~ 47039762 (-) | True | XLOC_016818 |
| TCONS_00032958 | mRNA | upstream | 1706418 | 47370323 ~ 47431205 (-) | False | XLOC_016824 |
| TCONS_00032959 | mRNA | upstream | 1715361 | 47379266 ~ 47431205 (-) | True | XLOC_016824 |
| TCONS_00032962 | mRNA | upstream | 1923333 | 47587238 ~ 47620806 (-) | True | XLOC_016827 |
| TCONS_00032939 | other | downstream | 629 | 45656144 ~ 45658746 (-) | False | XLOC_016813 |
| TCONS_00032936 | other | downstream | 148721 | 45507099 ~ 45510654 (-) | True | XLOC_016810 |
| TCONS_00032929 | other | downstream | 457044 | 45202223 ~ 45202331 (-) | True | XLOC_016804 |
| TCONS_00032922 | other | downstream | 585465 | 45073794 ~ 45073910 (-) | True | XLOC_016798 |
| TCONS_00032918 | other | downstream | 884780 | 44774275 ~ 44774595 (-) | True | XLOC_016792 |
| TCONS_00032943 | other | upstream | 1588 | 45665493 ~ 45691072 (-) | False | XLOC_016814 |
| TCONS_00032945 | other | upstream | 80958 | 45744863 ~ 45744979 (-) | True | XLOC_016815 |
| TCONS_00032947 | other | upstream | 1596732 | 47260637 ~ 47260753 (-) | True | XLOC_016820 |
| TCONS_00032948 | other | upstream | 1681136 | 47345041 ~ 47347297 (-) | False | XLOC_016822 |
| TCONS_00032949 | other | upstream | 1681293 | 47345198 ~ 47348412 (-) | False | XLOC_016822 |
