RNA id: TCONS_00032939


Basic Information

Item Value
RNA id TCONS_00032939
length 731
RNA type processed_transcript
GC content 0.51
exon number 2
gene id XLOC_016813
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45655294 ~ 45663945 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttaggaAGTAATAATCTTTAGAGTTAAATTAACATGTACTACATCGGCGATGCTGTGTAATAAGAGCATGTGTAAGTGTTGTTTTTGTGATGTTTATGGTGTTAATGGTTTTCCTCCTCTTGTGATCAGGAGCTGGACGTGAAAGCTGGAGGAGGGTGTGTTATGACGGTTGGAGAGATGCTTCGCTCCTTTCTGACCAAGCTGGAGTGGTTCTCAACATTGTTTCCAAGAATACCTGTACCTGTGCAGAAGGCAATTGATCAGCACATGAAGAGCCGACCGCGTAAACCCCCACAAAAAGATGagcaggaagaggaggaggaagaggccACAGCAGCACCAGCAGCCGATACAGGCAGGCATGGAGATAGGCGCCGTTCCAGGACACCTAGGAGAAGTCCAAGTCCCAGGAAATCCCAGAATCGCTCCCGGAGTCGCAGCCATCACAGAGAAAGGCATGGTGCTAGCTTTGATCATGAACTGGAGAGAGAACGAGACCGTCAGCGCAAGGAACGGGAAGGAAAGGACCGGGACAGAGATAGAGACAGGGACCGAGAGAGAGACAGGGAGAGAGACAGAGATAGACGACGTTCCAGAACTCCAGACCGAAACGCAGAACGCCGGCGGAGCAGAAGCAGAGAACGACGCCGGAGTCGCAGCACCAGCCGAGACAAGAGAACGGAGAGAAAAGACCGTGATAAAGACAGAGAggcagagagtgagagagag

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0071011 precatalytic spliceosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-2878 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Orthologous to human PRPF38B (pre-mRNA processing factor 38B).

Ensembl:

ensembl_id ENSDART00000137126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033937 lncRNA downstream 99480 45556180 ~ 45556664 (-) True XLOC_016811
TCONS_00033936 lncRNA downstream 207853 45432582 ~ 45448291 (-) False XLOC_016809
TCONS_00033934 lncRNA downstream 213762 45427658 ~ 45442382 (-) False XLOC_016809
TCONS_00033405 lncRNA downstream 213962 45441007 ~ 45442182 (-) True XLOC_016809
TCONS_00033935 lncRNA downstream 215233 45431839 ~ 45440911 (-) False XLOC_016809
TCONS_00033938 lncRNA upstream 360615 46019361 ~ 46034111 (-) True XLOC_016816
TCONS_00033406 lncRNA upstream 1204289 46863035 ~ 46865562 (-) True XLOC_016817
TCONS_00033407 lncRNA upstream 1431999 47090745 ~ 47099661 (-) True XLOC_016819
TCONS_00033939 lncRNA upstream 1683025 47341771 ~ 47344826 (-) True XLOC_016821
TCONS_00033941 lncRNA upstream 1698575 47357321 ~ 47367152 (-) False XLOC_016823
TCONS_00032937 mRNA downstream 25321 45629707 ~ 45630823 (-) True XLOC_016812
TCONS_00032934 mRNA downstream 145440 45499613 ~ 45510704 (-) False XLOC_016810
TCONS_00032932 mRNA downstream 145445 45491032 ~ 45510699 (-) False XLOC_016810
TCONS_00032933 mRNA downstream 145921 45491740 ~ 45510223 (-) False XLOC_016810
TCONS_00032935 mRNA downstream 151346 45502295 ~ 45504798 (-) False XLOC_016810
TCONS_00032944 mRNA upstream 7400 45666146 ~ 45691128 (-) True XLOC_016814
TCONS_00032946 mRNA upstream 1379657 47038403 ~ 47039762 (-) True XLOC_016818
TCONS_00032958 mRNA upstream 1711577 47370323 ~ 47431205 (-) False XLOC_016824
TCONS_00032959 mRNA upstream 1720520 47379266 ~ 47431205 (-) True XLOC_016824
TCONS_00032962 mRNA upstream 1928492 47587238 ~ 47620806 (-) True XLOC_016827
TCONS_00032936 other downstream 145490 45507099 ~ 45510654 (-) True XLOC_016810
TCONS_00032929 other downstream 453813 45202223 ~ 45202331 (-) True XLOC_016804
TCONS_00032922 other downstream 582234 45073794 ~ 45073910 (-) True XLOC_016798
TCONS_00032918 other downstream 881549 44774275 ~ 44774595 (-) True XLOC_016792
TCONS_00032917 other downstream 892769 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032941 other upstream 629 45659375 ~ 45663905 (-) False XLOC_016813
TCONS_00032942 other upstream 1189 45659935 ~ 45663902 (-) True XLOC_016813
TCONS_00032943 other upstream 6747 45665493 ~ 45691072 (-) False XLOC_016814
TCONS_00032945 other upstream 86117 45744863 ~ 45744979 (-) True XLOC_016815
TCONS_00032947 other upstream 1601891 47260637 ~ 47260753 (-) True XLOC_016820

Expression Profile

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