RNA id: TCONS_00032932


Basic Information

Item Value
RNA id TCONS_00032932
length 2884
RNA type mRNA
GC content 0.47
exon number 15
gene id XLOC_016810
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45491032 ~ 45510704 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGGTTTGTGTAAAGTTTTGACTCTTAACCGCTTCGATGAGACAAACTGTATTTATTTCGAAGCTAACTCATCTAATACATCCGCTTTTACGACATGTTTGGATGTAATTGATTTTTGTTTGGACCCTGTTGGATGTAAGCGACGAAACCGAGAGCAGGATCCGTGGGGAGTCGAAGGAGGTTCGTACGTTACTGAAGTCAGTGTTAACGTTGCCCATTTTGAGGATGGAGGCGTCCTGTTTGGATCTGGCTCTGGAGGCAGAGCGTCTGTGTAAGGTGGGAGATTACAGCGCCGGTGTTTCGTACTTCGAGGCTGCCATACAGGTTGGCACAGAAGACCTACAGGTTCTAAGCGCCGTCTACAGTCAGCTGGGGAATGCCTACTTCCACCTGCACGACTACAGCAAAGCTCTGGAGTTCCACCACCATGATCTTACACTCACTAGGACCACTGGTGATCGGCTTGGTGAGGCCAAAGCCAGCGGAAACCTGGGGAACACATTAAAGGTTTTGGGACGCTTTGATGAAGCGATTGTCTGCTGCCAGAGACATTTAGATATTGCCAGGGAACTGGGTGACAAGGTTGGGCAGGCCAGAGCACTTTACAATTTTGGAAACGTGTACCATGCCAAGGGGAAGAGTGTCTGCTGGAGTGGAGCAGAACCTGGAGACTTTCCTGAGGAGATCATGACAGCACTTAGAAGAGCCGCTGAGTATTATGAGGCGAACTTGTGTATCGTAAAGGAGCTTGGAGACAGAGCTGCACAGGGGAGGACCTATGGAAATCTAGGGAACACCTACTACCTGCTGGGAAACTTCAGGGATGCCGTGGCCTCTCATGAACAGCGTCTGCTTATCGCTAAAGAGTTCGGTGACCGGTCTGCAGAGAGAAGAGCCTACTGCAACCTGGGAAATGCTTGCATATTTCTTGGGGAGTTTGAAAGGGCTGCAGAACATTACAGGAGAGCTCTACAGATAGCCCGACAGCTGAAGGATCTGGCGGTGGAGGCTCAGGCCTGCTACAGTCTGGGTAACACATACACACTAATGCAGGACTTCGAGAGAGCCATAGACTACCATCTCAAACATCTCATCATCGCTCAGGACCTCAATGACAGAATCGGTGAAGGCAGGGCCTGCTGGAGTTTAGGGAATGCACATACAGCATTAGGCAATCATGACCAAGCTATGCACTTCGCAGAGAAACACTTGGAAATCTCAAAAGAGACCGGAGATCGTAGCGGTGAGTTGACTGCTCGCATGAACGTCTCAGATCTTCAGATGGTGCTCGGCATCAGTTACAGCACAAACAATTCAGTTCTGTCAGAGAATAAAGAGATCGACTACAACCTGCATGGAGCCAGACCCAGGATGAGCCGACGACACAGTATGGAGAACCTTGAGCTGCTGAAACTCACTCCTGACAAGATCAACGCCAATGGTCAGAAGTGGACCAGTGACATCCTCTTCAAGCAGTCCAAATCCTCACTAGCCAAGTCATCTTCAAAGCTATCTTTTGTGAATCGTTTCCGAGGAAAGAAGCACAAACTGCAGAGCAGCTCCAGTAAAATCCTGCAGGATACCAGCAACACACGGGACGCTCCTCAAAGCAAACATGGAAGTACAGACATGTTAGGAGACGAGGGCTTCTTTGACTTGCTGAGTCGATTTCAGAGCAACCGGATGGATGACCAGCGCTGTGCCATACAAGATAGCAAGAGCCACCTGTCTGTTAACTCCATCAGCGCTTCTCCACCCACCACACCACCCAGAACCATCAGGAAATCATTCTCAGAGTCAGCTGCAAGTCCAGGTCAGGAGCCGTTTCTCAGACTGCTGGCGAATGCTCAGGGCAGGAGGCTGGATGAGCAGAGGGCAGGAACGGGGAACAGTTTGCCTGGCCTGCGCACCCTGAATGAACACAGCAGCACCAACAACAGACAGATGATCCTCAGCCAGGTCATGGCCAGCACAGACGCCACCGAACCCGACGACCAGTTCTTTGACATGCTCGTCAAGTGTCAGGGGTCCCGCCTTGAAGATCAGAGGTGTGCCCCTCCTCCGCCCTCCACTCGTGGCCCCACCGTCCCAGATGAAGACTTCTTCAGCCTCATCATGCGCTCACAGGCCAAGAGGATGGATGAGCAGAGAGTCACGCTTCCCTCCTGCCGCTGATCAAGCATGCACTTATTCTTCTGAGCTCCGTATCAAGAAATGAGCTCTCTTTGATGCACATTACAGACCTCACTCTGGTAAAACAGTGAAGATCACGTAACATGCCATCAGTCTGAACTGTCCTGTCTGCTACATGACTATGAGTGGCGTATTATTTACACTTTTACTAATCAACTCTGGGAGGGGGGAGAGGTTTTTATGTAAATAACACTTTTAATTTTGATTTGGATTGACGCTCTTTGTACATTTTGCATTTATAATGGTTTTAAAGGATGTTTTAGCTCGGCATGAATTGCTTTGGTTATGATCACTACAGTAATTCATACAAATGTATCTTTTGATGCAAAACTGCAGgtttgattgtatttatttaacatttttattgttggtAGTTGCCTAATACTTAATATTAGATTTGTATTTGTGACAAATAACTTTGTCTTTTTTGTATTATCACGTTTAGTTTATAAAAGAAGTGGTTAAACTTAAGTGTCCAATTGGAAGATTCACTACAGCTGTATAGCAATAAAACCTGTACACAAACATTTCACATTTAGTTTTTCAAATGCTTTATTAGACAAGATGTAAGCACAGTAAACAGAATGTTTTTCACAGGCAGGCAGATCATTTAAATGTTCCTTATTTTCAAAAATTAGTCATGAAATATCATGGGATATTAAAATGTCCATTCCAGACACTAAAGGTCAA

Function

GO:

id name namespace
GO:0030695 GTPase regulator activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1169 Predicted to enable GTPase regulator activity. Predicted to be located in plasma membrane. Human ortholog(s) of this gene implicated in sensorineural hearing loss. Orthologous to human GPSM2 (G protein signaling modulator 2).

Ensembl:

ensembl_id ENSDART00000024034

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033936 lncRNA downstream 42741 45432582 ~ 45448291 (-) False XLOC_016809
TCONS_00033934 lncRNA downstream 48650 45427658 ~ 45442382 (-) False XLOC_016809
TCONS_00033405 lncRNA downstream 48850 45441007 ~ 45442182 (-) True XLOC_016809
TCONS_00033935 lncRNA downstream 50121 45431839 ~ 45440911 (-) False XLOC_016809
TCONS_00033404 lncRNA downstream 57404 45432582 ~ 45433628 (-) False XLOC_016809
TCONS_00033937 lncRNA upstream 45481 45556180 ~ 45556664 (-) True XLOC_016811
TCONS_00033938 lncRNA upstream 508662 46019361 ~ 46034111 (-) True XLOC_016816
TCONS_00033406 lncRNA upstream 1352336 46863035 ~ 46865562 (-) True XLOC_016817
TCONS_00033407 lncRNA upstream 1580046 47090745 ~ 47099661 (-) True XLOC_016819
TCONS_00033939 lncRNA upstream 1831072 47341771 ~ 47344826 (-) True XLOC_016821
TCONS_00032931 mRNA downstream 154057 45332137 ~ 45336975 (-) True XLOC_016807
TCONS_00032930 mRNA downstream 159917 45330452 ~ 45331115 (-) True XLOC_016806
TCONS_00032928 mRNA downstream 299713 45172838 ~ 45191319 (-) True XLOC_016803
TCONS_00032927 mRNA downstream 336410 45153441 ~ 45154622 (-) True XLOC_016802
TCONS_00032925 mRNA downstream 336482 45139470 ~ 45154550 (-) False XLOC_016802
TCONS_00032937 mRNA upstream 119008 45629707 ~ 45630823 (-) True XLOC_016812
TCONS_00032938 mRNA upstream 144595 45655294 ~ 45663945 (-) False XLOC_016813
TCONS_00032944 mRNA upstream 155447 45666146 ~ 45691128 (-) True XLOC_016814
TCONS_00032946 mRNA upstream 1527704 47038403 ~ 47039762 (-) True XLOC_016818
TCONS_00032958 mRNA upstream 1859624 47370323 ~ 47431205 (-) False XLOC_016824
TCONS_00032929 other downstream 288701 45202223 ~ 45202331 (-) True XLOC_016804
TCONS_00032922 other downstream 417122 45073794 ~ 45073910 (-) True XLOC_016798
TCONS_00032918 other downstream 716437 44774275 ~ 44774595 (-) True XLOC_016792
TCONS_00032917 other downstream 727657 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032916 other downstream 730685 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032939 other upstream 145445 45656144 ~ 45658746 (-) False XLOC_016813
TCONS_00032940 other upstream 145537 45656236 ~ 45663914 (-) False XLOC_016813
TCONS_00032941 other upstream 148676 45659375 ~ 45663905 (-) False XLOC_016813
TCONS_00032942 other upstream 149236 45659935 ~ 45663902 (-) True XLOC_016813
TCONS_00032943 other upstream 154794 45665493 ~ 45691072 (-) False XLOC_016814

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000152_02334753_02345817.mRNA True 2598 mRNA 0.48 14 CI01000152 2334168 ~ 2345817 (-)