RNA id: TU194697


Basic Information

Item Value
RNA id TU194697
length 3183
lncRNA type read_through
GC content 0.48
exon number 2
gene id AMCG00005835
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10679937 ~ 10714707 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggataaaatcTTCGCCTCCATCTTTTTCTCCATTTTGATGTGCTGTCCTGCCCCTTCGGGTTGCTCATGCATTACCATAGCACTGAGGCTGCCACAGGCTATCCATTATTGAAGTTTCATACAATTTACTTGCTGTACTTATGTTTGCAGATTACAGTTATAGAGGTAATGAGCGAGGTCATGATATAAATAATAGTGTGCATCTTCTGTTTTTGTGCCGAGTAACTTGTTAAAAAGTTCTTGGGGAATCTGTAATCTAGTGTGTGAGGAGGACGGGCTGTGTGTGTCGATCgtctgtttcttcatttttatttttattttttttccatcggGTGGCATGGTTTAGGACGATTTAAcagtgattttaaaaagaaactaaataaagaaatagttttatttatcttatttatgGACCAGATTTTATAgatgtcgttttgtttttttcttccctttttatcGTTTTGTTTCCTTCCTGATGAGTTTTGCGCTCATCTCTCTCCCTGGGGGGACAGTAGGTCTGTTCTGCTGTAAGAAATTCATAAACGCACGCAGGCGCATTGTTTTAGGCACGCAATGAGCTGTCACTCCGGTTCACTCGGTTGCTGCCGTGTTCGACTGAAGTGGCCGTCAAGACACTTTATGCATCACTTGATTCTTCTTTGGTTCGGTTTCTTcaatgatggaaaaaaaaaattctttaTAAAAATTTTTAGGAGCAGTGCTTTATGCAAAAATAGGAAATTCTACAATCTATATTAAGGAGCGATCAGTGGTTGAAAATTGTCTGGTGcgtgcttttctttattttgttgtaccTCTCGTTGTGGTCCTTTGGCTTGTCCTGGCTTAGTGACACTAGAAGCTGCGGAGCCGTGctgcggggtggggggggtttctGCAGTACGGTCGGGTCAGTTTCACGCATTCTCATCACAAGGGCTAATGAACTCTTAACATTTATTACAGGCTTCTATAGATAGTGTAGTGCGAGAGAgttttaatgtgcatttttgcAGGGCTGGGAGTGAGGACCggagatggggtgggggggtttgcATCAGACGACGCAAAAATGGAGAGCGGGGCGCGGCTCGAGTGCGGGTTCAGCACGGACATGTGTACAGGGGGGCCCCGGCGGCGCAGCACAGAGCCCCTGCTCCAGCACAGCGGGGAGCAGTACCAATACAGCGAACACATGAACACCACCTCTCGCCCTGTGAgtgaacagagagagagcgatagagagagagcgcatgtTCTTCTGAGCCGAGTCCCCCAGAGCTACCCCCACCGCTAAAAACCCAAACTACAAGCCCCAAACAACGACTATCTGCATGCCGTCGTCTCTGTACCCGCCGGTCACTGTCCTGTCCTGCCCGCACACTACTTGGCCCAGGCTGGGTCAGAGGTAGAGGGGCACCAGGGGCTCTGAGGGGCCGCTGCTGGCGCCAGTCTCATCTTTTGCTGTTCtcggagggagaggaggaacagggtggtggtggtggtggtgtttccCTCTTCTTGTTGAGCCTCTTGAATTAGTGCCAATACCTGATAAGTATTTGAAAAGCCGCAGTATCCTCCCGTCTGGAGACGCTGGGCGGCCGGGGCCCTCTGCACTGTCGCACTGTTGGATCTACTGTATCAGTATGGGGATATTAAGTATTATAGTGATTTGTCACAGCTGGACGGGGTTGGGGGGGTTACTGTAGTGCCACCAGATCATTTAGAGTTCCTGGGAGCTGCCGCCTGTTGCAAAAACAAAGCTGCAAGGATGTTTCTGATCCACGACGGACCGAGAACACGGGTTCGACAGACTAAATTCTggagaaattaaatgttttttgtggtgTGGGTTGAGCCAGCAGGCGCAGAATCGCTCAACAGCTGCTAATAACTGGCCTGTGACCCTGAGAAGGCAGCTGCCTTCAACTCGTCCTCGCGCTCCGAAACACTCCATGGCATTGGGGGTCTGCGGCCCCCACTGTGTCCACACCTacagaaccaaacaaaaaattaGGAAAAGggtccatttttatttttatggtttgttttcccCACTCCTCCAACACCTAAATCTAACATCTATGGCTGACACTGCTGGCCATCTTAAAATGAGAACCCAAACGGCGCTGACCCCGCCGTGTCACCTTGTCTCTCCTGCGTGGCAGCGCTGCCGCGGCGCCACGTGCCGATTGGTGGGCCGGAGTCCTTCAGTGCAGACCAGGGTGCTGCTCCAAGTGTTTGTTAATTGAGGAGAAGCGTTTGTAAtgataaaggctgctgctgttCGTTAAGGAGTCCCTTGGAGTCTTTGAGTCGTAtggctgtgtctgtgcattGGGTTTCAGGATCTTATTTGTGCTGGTTTGCGGACAGCAGCTCCGTCGGCCCGTCTCTTGGCCGGTGAGGAGCGGTCTGACTTCTCTCTGAGGCGCTGGGGGCATGGGGGGTCAGCGATGAGCGCAGGAGGCGTGAGTGGCAGCGGACTGGGAGGTGTGGTGCCAGCCTCTCCGGCTGCTGCGCTCTGAGACAAAGCCGCACCGCACTTACAGATGGTGCAGGTAATGGATATAACCCCACACCTGTGTACGCAGGGTTTGTGCATGTGGCACTGTGATAGCACTGGCGGACAGTGGggatacatttgtatttatttgtaaactcGGAGGCATCGGTGGGGTGTGAGTTTTGAGTGTTATCTTCCTCGGCGGAAAGCAAAATATTACAGATAAATTAGATGAGTCAGCGCAGAaccagtgcNNcccccccccccccacccacctcaCCCTCTGCAACAATGGAATGAAGCATTGTAATCTTTTGGAGCTTTGTAAAGGTCTTTTTTGACTTCTCttattttgtgttgtatgtAATACCTTCAGTGTGTAACTTggcaaaaatgtatgtttgtgttatgGAAACCAATACTATAGCttggtttaaaaaaaggaaaaaacaagaaaaaaaaacgaaaaaaaacaaaaaaacgatgacaaaaaaacaaataaatgaataattaaaaaaaaaactgaaacatttactataaatgaatgaaaatttCTGCAGTAAGGAAGTATTTATGGTGCCTTACAAATAAAATTCAATGGAGGTCAGATCCCGGGTCTGTGTGCTTATTATGATCGTTGTTATTTATAATGGTGTTatttccctcctcctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194696 lncRNA upstream 21882 10667998 ~ 10668261 (+) True G154583
TU194687 lncRNA upstream 113706 10575979 ~ 10576437 (+) True G154574
TU194598 lncRNA upstream 164091 10523967 ~ 10526052 (+) True G154505
TU194560 lncRNA upstream 200289 10419906 ~ 10489854 (+) False G154473
TU194561 lncRNA upstream 200289 10441067 ~ 10489854 (+) True G154473
TU194890 lncRNA downstream 282942 10997649 ~ 10999389 (+) True G154722
TU194957 lncRNA downstream 459688 11174395 ~ 11180237 (+) True G154775
TU194983 lncRNA downstream 605257 11319964 ~ 11361770 (+) False G154798
TU195006 lncRNA downstream 647298 11362005 ~ 11362233 (+) True G154815
TU195007 lncRNA downstream 655717 11370424 ~ 11370912 (+) True G154816
AMCG00005803 mRNA upstream 56711 10626449 ~ 10633432 (+) True AMCG00005803
AMCG00005804 mRNA upstream 67134 10615882 ~ 10623009 (+) True AMCG00005804
AMCG00005857 mRNA upstream 166312 10520856 ~ 10523831 (+) True AMCG00005857
AMCG00005856 mRNA upstream 182851 10503578 ~ 10507292 (+) True AMCG00005856
AMCG00005858 mRNA upstream 187321 10502507 ~ 10502822 (+) True AMCG00005858
AMCG00005834 mRNA downstream 7045 10721752 ~ 10736626 (+) True AMCG00005834
AMCG00005833 mRNA downstream 130829 10845536 ~ 10846858 (+) True AMCG00005833
AMCG00005826 mRNA downstream 167912 10882619 ~ 10886247 (+) True AMCG00005826
AMCG00005867 mRNA downstream 191650 10906357 ~ 10912672 (+) True AMCG00005867
AMCG00005868 mRNA downstream 205241 10919948 ~ 10923547 (+) True AMCG00005868
TU194591 other upstream 173753 10512504 ~ 10516390 (+) True G154499
TU194578 other upstream 218512 10470543 ~ 10471631 (+) True G154486
TU194579 other upstream 221792 10462537 ~ 10468351 (+) False AMCG00005821
TU194450 other upstream 602451 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 613641 10065160 ~ 10076502 (+) False AMCG00005802
TU194711 other downstream 7625 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 198690 10913397 ~ 10915729 (+) True G154636
TU194894 other downstream 292837 11007544 ~ 11010354 (+) True AMCG00005840
TU194931 other downstream 368454 11083161 ~ 11086011 (+) True G154756
TU194985 other downstream 605257 11319964 ~ 11325074 (+) True G154798

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU282480 False 2458 TUCP 0.42 2 NW_025048446.1 1019684 ~ 1022876 (+)